Pairwise Alignments

Query, 243 a.a., INTEGRAL MEMBRANE PROTEIN (Rhomboid family) from Variovorax sp. SCN45

Subject, 226 a.a., RDD family protein from Rhodanobacter sp000427505 FW510-R12

 Score =  159 bits (402), Expect = 4e-44
 Identities = 92/229 (40%), Positives = 133/229 (58%), Gaps = 5/229 (2%)

Query: 3   LDTLYTAETPEGIALSLRPAGLVARGLAYLIDFAIRLGIFVGISIAVGMLGKMGFGILLV 62
           LDT+   ETPEG++L LR AG + R  A+++D  +RL +     I + + GK G G+ ++
Sbjct: 2   LDTVREIETPEGVSLRLRAAGALPRAQAWMVDLLLRLVVLFVAMIPLALFGKGGNGLAML 61

Query: 63  AYFCLEWFYPVVFELTRAAATPGKRVMGLRVVMDSGLPVTPAASLTRNLLRAADFVPSFY 122
             F L W Y VV E+     T GKR +GLRVV   G PVT   S+ RNLLR  D +P  Y
Sbjct: 62  LMFALLWAYSVVCEVWLDGQTLGKRALGLRVVKADGTPVTWLPSVVRNLLRVVDALPGVY 121

Query: 123 GAGIVSMLWRRDSKRLGDLAAGTLVVFSDQVSLHGGVPAAEPQAPARPLSAREQMAVVSW 182
           G G+ S L    ++RLGD+ AGT+V+ + ++     VPA       + L+A EQ A+V +
Sbjct: 122 GVGLASTLIDPHARRLGDIVAGTMVIHAQELPAGQQVPALPALPLPQVLAADEQAALVEY 181

Query: 183 AGRATRLTPERFDELARIAQPVLGPDTSAGGGASASQRLLGVAQWVLGR 231
           A RA +LT +R +ELA +  P+ G   +A     A ++L+  A W+LGR
Sbjct: 182 AERAGQLTVQRQEELANLLTPLTGQRDTA-----AIRQLVAHANWLLGR 225