Pairwise Alignments

Query, 339 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Variovorax sp. SCN45

Subject, 321 a.a., hypothetical protein from Xanthobacter sp. DMC5

 Score = 57.4 bits (137), Expect = 5e-13
 Identities = 60/252 (23%), Positives = 98/252 (38%), Gaps = 9/252 (3%)

Query: 10  AAFARALTGIAAAALFGAAGPAAAQEKITYNMAWLPQGSSVGVIVAKEQGFFRELGLDAT 69
           +A  R     A  AL   A PA+AQ            G  + ++ A++ G F++ G+D  
Sbjct: 3   SATRRLFLSAAGIALLAFASPASAQNPKLRVGGTPNYGPVLPIMAAEKLGLFKKAGVDVE 62

Query: 70  IVRGYGGNRTANELDQGQFEFGYVDPISLVLNRANGGKIRMVGALNTRWPAGICFDTKRH 129
                GG+ +   L  G+ +     P  L L RA G K R++ A  T  P G    ++  
Sbjct: 63  FSGYQGGSASMEALAAGEADIVNFIPPGLALARARGVKARIISA-GTITPRGWWVMSRED 121

Query: 130 QP-KTPADMKGLVLGGGSASPVHNVVPAWLEQNGQPKDSIRLLRMDPAVVDASLIEGRID 188
              KT  D+ G  +G  S     +V   W+E   Q   +   + +  + +  +L    +D
Sbjct: 122 SSIKTIKDLVGKKVGTSSPGAATDVFALWVE--SQSGGTFTRVPVGGSGLIPNLTAKNVD 179

Query: 189 LAECWRASNRAVTQKQANAAGVKLGWIEYSDFGLDAYGSGFATSEDVIGKRPDVVKKFLR 248
               +   +  +         V LG     +         +  S++ I K+P+ VKKFL 
Sbjct: 180 AVVAFPPVSYRIASSGLGRVVVDLGAAMKPN-----VPDVWVASDEAIAKKPEAVKKFLA 234

Query: 249 ASYRGYAYALAN 260
           A Y    Y   N
Sbjct: 235 AFYGAVRYMQEN 246