Pairwise Alignments

Query, 339 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Variovorax sp. SCN45

Subject, 342 a.a., ABC transporter, periplasmic binding component-related protein from Pseudomonas putida KT2440

 Score = 65.5 bits (158), Expect = 2e-15
 Identities = 91/346 (26%), Positives = 137/346 (39%), Gaps = 44/346 (12%)

Query: 11  AFARALTGIAAAALFGA----AGPAAAQEKITYNMAWLPQGSSVGVIVAKEQGFFRELGL 66
           A AR L  + AAAL       A  A A +K+    +W  Q    G   A   G + + GL
Sbjct: 7   ALARPLRSLLAAALLPTTLTIAPLAIAGDKVVLLTSWYAQAEQGGFYQALADGLYEKEGL 66

Query: 67  DATIVRGYGGNRTANELDQGQFEFGYVDPISLVLNRANGGKIRMVGALNTRWPAGICFDT 126
           D +I  G         L   Q +F     + ++ +   G  +  V A     P G+    
Sbjct: 67  DVSIRMGGPQVNGMQLLVSKQADFIVNYDLQILKSVEQGLPVVAVAAPFQGDPQGLM--- 123

Query: 127 KRHQPKTPADMKGLVLGGG-----SASPVHNVVPAWLEQNGQPKDSIR---LLRMDPAVV 178
                 T AD+ GL   GG     S S      P WL+   Q  D+        + P + 
Sbjct: 124 ------THADVSGLDALGGKPVLVSTSGQQTWWP-WLKGKYQLADNQARPYTFNLQPFLA 176

Query: 179 DASLIEGRIDLAECWRASNRAVTQKQANAAGVKLGWIEYSDFGLDAYGSGFATSEDVIGK 238
           D    +     +E +          QA  AGV   +  ++D G   YGS   T +D+I +
Sbjct: 177 DPQTTQQAYASSELF----------QAIKAGVTPNFFLFADAGYPPYGSTVVTRQDIIAE 226

Query: 239 RPDVVKKFLRASYRGYAYALANPEKAADLMVKAFPT-TDRAVA-----LAQIRDMADLLV 292
            P+ V  F+RAS  G+   L +P     L+ +  P  TD  +A     L Q R    L+ 
Sbjct: 227 HPERVAGFVRASMEGWKRYLDDPSAGNALIKRDNPNMTDELLAWGVSTLKQYR----LVT 282

Query: 293 DPQAKANGMGYLREDRMRNTVQFVDKAFGLNGKVKP-QDTYTNEML 337
             +A   G+G + + R + T  F+ +A GL G   P ++ YT   +
Sbjct: 283 GGEAATQGIGTMTDSRWQATRDFMVEA-GLLGPDAPWRNAYTTRFV 327