Pairwise Alignments

Query, 421 a.a., RND efflux system, membrane fusion protein from Variovorax sp. SCN45

Subject, 384 a.a., Probable efflux pump periplasmic linker TtgA from Pseudomonas putida KT2440

 Score =  301 bits (772), Expect = 2e-86
 Identities = 184/405 (45%), Positives = 252/405 (62%), Gaps = 28/405 (6%)

Query: 12  FSPRL-ATVAAVALL-VLAGCGKSDAPAGAGAPGGAHPAPEVGVVVAAPGDVGLVTELPG 69
           F P + A V+AVAL  +L+GC K +A   A        AP+VGVV   P    L +ELPG
Sbjct: 3   FKPAVTALVSAVALATLLSGCKKEEAAPAA-------QAPQVGVVTIQPQAFTLTSELPG 55

Query: 70  RLEASRVAQVRARASGILLKREFREGSDVKAGQLLFRIDPAPLAAALQNAQATLARAEAN 129
           R  A RVA+VR + +GI+LKR F+EGS+VK GQ L++IDPA         +ATLA A+AN
Sbjct: 56  RTSAYRVAEVRPQVNGIILKRLFKEGSEVKEGQQLYQIDPAVY-------EATLANAKAN 108

Query: 130 AVQAKALADRYKPLVEANAVSKQEYATAVASQKTAEADVASGRAAVQTAKINLGYADVTS 189
            +  ++LA+RYK L++  AVSKQEY  A A +  AEA + S       A+I+L Y  V +
Sbjct: 109 LLATRSLAERYKQLIDEQAVSKQEYDDANAKRLQAEASLKS-------AQIDLRYTKVLA 161

Query: 190 PISGRIGRALVTEGALVGQGEATELAVVQQINPVYVNFTQSATDVLKLRRALADGQYKRA 249
           PISGRIGR+  TEGALV  G+   +A +QQ++P+YV+ TQS  ++LKLRR L  GQ ++A
Sbjct: 162 PISGRIGRSSFTEGALVSNGQTDAMATIQQLDPIYVDVTQSTAELLKLRRDLESGQLQKA 221

Query: 250 GSEEAASVRVVLEDGSEYALEGKLLFSDLTVDSTTGQIMLRAEVPNPKGELLPGLYVRVR 309
           G + AASV++VLEDGS +  EG+L FS++ VD TTG + LRA  PNP   LLPG++V  R
Sbjct: 222 G-DNAASVQLVLEDGSLFKQEGRLEFSEVAVDETTGSVTLRALFPNPDHTLLPGMFVHAR 280

Query: 310 LEQAQATNAITLPQQAVTRTQQG-DTVTVVDKDGKLSKRNVKISAAKDNQWVVLDGLKAG 368
           L+     NAI  PQQ VTR  +G  T  VV+++ K+  R +K S    + W++ +GL  G
Sbjct: 281 LKAGVNANAILAPQQGVTRDLKGAPTALVVNQENKVELRQLKASRTLGSDWLIEEGLNPG 340

Query: 369 EQVMVDGFQKLQMMPPGTPVKAVPWTKPNPAAAAKPAAAAPAAAE 413
           ++++ +G   LQ + PG  VK    T     A    A AA A A+
Sbjct: 341 DRLITEG---LQYVRPGVEVKVSDATNVKKPAGPDQANAAKADAK 382