Pairwise Alignments

Query, 1054 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

Subject, 1082 a.a., multidrug efflux RND transporter permease subunit from Rhodanobacter sp000427505 FW510-R12

 Score = 1013 bits (2620), Expect = 0.0
 Identities = 530/1059 (50%), Positives = 710/1059 (67%), Gaps = 36/1059 (3%)

Query: 1    MAKFFIDRPIFAWVIALFILVVGGVAITQLPISQYPPVAPPAIVINVAYPGASAQTLEDS 60
            M  FFIDRPIFAWV+A+ I + G ++I  L +  YP VAPP++V+N  YPGASA T E +
Sbjct: 1    MPSFFIDRPIFAWVVAILIALGGVLSILNLGVESYPSVAPPSVVVNAVYPGASADTTEKN 60

Query: 61   VLSVIEREMNGSPGLIYMESVAQADGTGSITISFEAGTNDDLAQVDVQNRLSRATPRLPA 120
            V  VIE+++ G   L+Y  S + + G  SIT++FE GTN D+AQV VQN++S ATPRLP+
Sbjct: 61   VTQVIEQQLTGIDHLLYFSSSSSSSGRASITLTFENGTNPDIAQVQVQNKVSLATPRLPS 120

Query: 121  AVTQQGVRVDKSRNNFLMFVMLSSDNPNFDPVALGDYAARNVVPELQRVVGVGQAQLFGS 180
             VT+QGV V K+   FL  V L SDNP  D   L D  A  V+ ++ RV GVG  Q FG 
Sbjct: 121  EVTKQGVVVAKANTGFLEVVALRSDNPAIDRARLNDIVASQVLDQIARVPGVGSTQQFGG 180

Query: 181  ENAMRIWIDPAKLQGYNLSATDVNNAIRAQNAQVSSGTIGDLPNIPGQAIAATVVVNGQL 240
            E AMRIW+DP KLQGY LSA+    A+ AQN Q ++G++G  P   GQ I+ TV   G+ 
Sbjct: 181  EYAMRIWLDPDKLQGYGLSASQALAAVTAQNVQFAAGSLGSDPAANGQGISVTVATEGRF 240

Query: 241  ANVDQFKDIVLRANTDGSTVRLKDVARVELGGQSYATSARLNGVPAVGVGVQPTPNGNAL 300
               +QF++I+LRAN DG+TV+L DVA V  G   Y  +   NG+P     +Q  P  NAL
Sbjct: 241  TTPEQFENIILRANNDGTTVKLGDVAWVSFGAGVYGFNTTYNGLPVAAFAIQLLPGANAL 300

Query: 301  QSAKAIRAKMAELERYFPQGVKWAIPYDSSRFVQISITEVVKTLLEAVALVFVVMFLFLQ 360
              A A+  KM EL   FPQGV W  PYDS+ FV++S+ EVV TL+EA+ LVF+VM +FLQ
Sbjct: 301  DVATAVHGKMDELAGSFPQGVSWFTPYDSTTFVKVSVNEVVHTLIEAIVLVFLVMLIFLQ 360

Query: 361  NWRYTIIPTIVVPIALLGTFASLLALGFSINVLTMFGMVLVIGIVVDDAIVVVENVERIM 420
            N R TIIPT+V+P+ALLGTF  +L LGF+IN LT+FGMVL IGIVVDDAIVV+ENVERIM
Sbjct: 361  NIRATIIPTLVIPVALLGTFIGMLLLGFTINQLTLFGMVLAIGIVVDDAIVVIENVERIM 420

Query: 421  SEEGLSPLEATRKAMRQISGAIIGVTVVLVSVFVPLAFFAGSTGNIYRQFSAVMVASIGF 480
            +E+GLSP EAT+KAM QI+GA++G+TVVL++VFVP +F  G+ G IY+QF+  +  S+ F
Sbjct: 421  TEDGLSPKEATKKAMGQITGAVVGITVVLIAVFVPSSFQPGAAGVIYKQFALTIAMSVAF 480

Query: 481  SAFMALSLTPALCATLLKPVEAGHHHEKRGF-FGWFNRGFSRTAKGYESLVARVLRRAAR 539
            SAF+ALS TPALCA+ L PV    H EK+ F F WFN  F +    Y   +   +R A R
Sbjct: 481  SAFLALSFTPALCASFLTPV----HEEKKNFVFRWFNTAFGKITHTYTGHIGSAVRHAPR 536

Query: 540  YLVIYVAIIGAVVFTYTRLPSSFLPQEDQGNIIVNVQLPPGATQERALSVMQQVEGFILK 599
            +++++V I     F YTRLP SFLP+EDQG  +  VQLPPGA+ +R  +VM+Q+   + +
Sbjct: 537  WVMVFVLISVLTGFLYTRLPGSFLPEEDQGFALAVVQLPPGASLQRTNAVMRQILTVLKQ 596

Query: 600  QPEVQSMVGVMGFSFSGQGQNAGLAFVTLKDWDERK------------------------ 635
             P V  +V + GFSF G G+N G++F+ LK W ER                         
Sbjct: 597  DPAVDGVVQIAGFSFLGMGENVGMSFIRLKPWGERGWAPDQKAAQEQHDKLVKEGKAKPI 656

Query: 636  DPAHSASALAGRAFGALSGIRDAFIYPLSPPPIPELGNASGFSFRLQDRSGAGHEALINA 695
            D   +A+    RA GA+  +RDA I+ ++ P +  LG   GF   LQDR G G +AL  A
Sbjct: 657  DLGVTAAEFIQRANGAVQSVRDAQIFIVNVPTVQGLGQFGGFDMYLQDRGGTGRDALTAA 716

Query: 696  RNQLLGMASQSKILSQVRPDGLEDAPQLQIDIDRDKANALGVSFDAINATLSTALGSSYI 755
            RN LLG ASQ+ +L  VRP+GLEDAPQL++D+DR +A ++G+S   I   +S  L   Y+
Sbjct: 717  RNTLLGAASQNPLLVGVRPNGLEDAPQLRLDVDRTQALSMGLSVGDIYNAISLMLAPVYV 776

Query: 756  NDFPNRGRLQRVVVQADAPARMQPDDLLKL----NASNTQGLP--VPLSAFATTKWVTGA 809
            NDF   GR++RV++QAD+P RM P+    +      +N  G P  +PLS     KW   +
Sbjct: 777  NDFSYGGRVKRVIMQADSPHRMGPEAFQHIFTPSTRTNADGTPQMIPLSNVVQAKWQMAS 836

Query: 810  TQTVRYNGYPAIRISGDAAAGYSTGAAMAEMEKLAS-QLPQGFGFEWTGQSREEKLAGSQ 868
               VRYNGY A+ I G  A G+++G AM  M+K+ S  LP GFG++WTGQS +E L+G+ 
Sbjct: 837  PSLVRYNGYSAVEIVGSPAPGHASGEAMNIMQKIVSDDLPHGFGYDWTGQSYQEILSGNT 896

Query: 869  AIVLYGFAILAVFLCLAALYESWSIPLSVILVVPLGVLGVLLATMLRAYSNDVYFQVGLI 928
            AI+L   +++ VFLCL ALYESWSIP+SV+LVVPLG+LG ++ T+LR   +D+YF++G+I
Sbjct: 897  AILLMVLSVVIVFLCLTALYESWSIPVSVLLVVPLGILGAVVFTLLRGLPDDIYFKIGVI 956

Query: 929  TIIGLSAKNAILIIEFAKDLQAQGKGVIESALAAAHLRFRPIVMTSLAFGLGVLPLVLAS 988
            T++GL+AKNAILI+EFA   Q QG+ + E+ + AA LR RPI+MTS+AF  GV PL +++
Sbjct: 957  TVMGLAAKNAILIVEFAVIEQRQGRTLREAVVDAARLRLRPILMTSIAFIGGVFPLFVST 1016

Query: 989  GAGSASQRAIGTGVLGGMVTGTALAVIFVPVFFVVVRSL 1027
            GAG+ ++ AIGTGV+GGM+  T L V+ +PVF+VVVR L
Sbjct: 1017 GAGANARHAIGTGVIGGMLFATFLGVLLIPVFYVVVRRL 1055