Pairwise Alignments

Query, 918 a.a., ATP-dependent, 3'-5' DNA helicase with strand annealing activity from Variovorax sp. SCN45

Subject, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score = 60.5 bits (145), Expect = 2e-13
 Identities = 88/368 (23%), Positives = 152/368 (41%), Gaps = 37/368 (10%)

Query: 52  VKAALDAWFAERGWKPFKFQRDVWKAIAQGRSGLLHATTGAGKTYAVWLGALQAFSLPRK 111
           +KA  +  F E    P   Q        +GR   + A TG+GKT A  L  L     P K
Sbjct: 12  LKAVAELKFVE----PTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNRLIGPAK 67

Query: 112 ETARPAPPPLTVLWLTPMRALAADTLRALQQPLEALGAEVHPWSTGARSGDTSSAERSAQ 171
                    +  L L P R LA  TL+ +++  +    +     +G  +G      ++A 
Sbjct: 68  VRVS-----IKTLILLPTRELAQQTLKEVERFSQFTFIK-----SGIITGGEDFKVQAAM 117

Query: 172 NQRLPSVLVTTPESLSLLLARADANEVLGSVRLAVVDEWHELLGNKRGVQVQLALARLRR 231
            +++P +L+ TP  +   L   + +  L  V + V+DE   +L       VQ  ++    
Sbjct: 118 LRKVPDILIGTPGRMIEQLNAGNLD--LKEVEVLVLDEADRMLDMGFADDVQRLVSECVN 175

Query: 232 WNPGMTVWGMSATLGN--LKEAMHALLGHEEGVLVQGQVPKKLVIDSLLPGRAERFPWGG 289
               M     SAT G   L+E +  +L + E + V         +  L     ++     
Sbjct: 176 RQQTML---FSATTGGSTLREMVAKVLNNPEHLQVNN-------VSDLNATTRQQIVTAD 225

Query: 290 HLGLTMLPQVIEEIAASKT---TLVFTNTRSQSEIWYQALLEARPEWAGSIALHHGSLDR 346
           H       Q++  + A++T    +VFTNTR+ ++  Y  L+    E+   +   HG  D+
Sbjct: 226 HN--VHKEQILNWLLANETYQKAIVFTNTRAAADRIYGRLVAQ--EYKAFVL--HGEKDQ 279

Query: 347 EVREWVELGLKSGELKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLLQRAGRSGHAPG 406
           + R+     LK+G +K +V T     G+D   ++ V+    P+     + R GR+G A  
Sbjct: 280 KDRKLAIDRLKAGGVKILVATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIGRTGRAGN 339

Query: 407 RPSRITLV 414
               I+L+
Sbjct: 340 DGLAISLI 347