Pairwise Alignments

Query, 918 a.a., ATP-dependent, 3'-5' DNA helicase with strand annealing activity from Variovorax sp. SCN45

Subject, 626 a.a., ATP-dependent RNA helicase from Pseudomonas putida KT2440

 Score = 50.4 bits (119), Expect = 3e-10
 Identities = 97/400 (24%), Positives = 155/400 (38%), Gaps = 38/400 (9%)

Query: 46  GRSKTKVKAALDAWFAERGWKPFKFQRDVWKAIAQGRSGLLHATTGAGKTYAVWLGALQA 105
           G S+  V+A   A + +    P   Q+    A+ QGR  ++ A TG GKT    L  L+ 
Sbjct: 7   GLSEALVRAIEAAGYTQ----PTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPILER 62

Query: 106 F---SLPRKETARPAPPPLTVLWLTPMRALAA---DTLRALQQPLEALGAEVHPWSTGAR 159
                 P K + R  P    VL LTP R LAA   D+ +   + L  + A +        
Sbjct: 63  LFPAGHPDK-SQRHGPRQPRVLVLTPTRELAAQVHDSFKVYARDLPLVSACIF------- 114

Query: 160 SGDTSSAERSAQNQRLPSVLVTTPESLSLLLARADANEVLGSVRLAVVDEWHELLGNKRG 219
            G      +     +   VLV  P  L  L  +   +  L  V + V+DE   +L     
Sbjct: 115 -GGVGMNPQIQAIAKGVDVLVACPGRLLDLAGQGKVD--LAHVEILVLDEADRMLDMGFI 171

Query: 220 VQVQLALARLRRWNPGMTVWGMSATLG-NLKEAMHALLGHEEGVLVQGQVPKKLVIDSLL 278
             V+  LARL      +     SAT   ++ +    LL + E + V    P    ++ + 
Sbjct: 172 HDVKKVLARLPAKRQNLL---FSATFSKDITDLADKLLHNPERIEV---TPPNTTVERI- 224

Query: 279 PGRAERFPWGGHLGLTMLPQVIEEIAASKTTLVFTNTRSQSEIWYQALLEARPEWAGSIA 338
             R  R P      L  L  +I  + A +  LVFT T+  +      L E   +   + A
Sbjct: 225 EQRVYRLPASHKRAL--LAHLIT-LGAWEQVLVFTRTKHGAN----RLAEYLEKQGLTAA 277

Query: 339 LHHGSLDREVREWVELGLKSGELKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLLQRA 398
             HG+  +  R       K+  ++ +V T     G+D   +  V+    P      + R 
Sbjct: 278 AIHGNKSQNARTKALADFKANSVRVLVATDIAARGLDIDQLPHVVNFELPNVEEDYVHRI 337

Query: 399 GRSGHAPGRPSRITLVPTHSIEMVEG--AAARAAIAEGHI 436
           GR+G A      I+LV     ++++      +  IA+G +
Sbjct: 338 GRTGRAGRSGEAISLVAPDEEKLLKSIERVTKQRIADGDL 377