Pairwise Alignments

Query, 918 a.a., ATP-dependent, 3'-5' DNA helicase with strand annealing activity from Variovorax sp. SCN45

Subject, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

 Score = 65.9 bits (159), Expect = 5e-15
 Identities = 92/376 (24%), Positives = 157/376 (41%), Gaps = 46/376 (12%)

Query: 52  VKAALDAWFAERGWKPFKFQRDVWKAIAQGRSGLLHATTGAGKTYAVWLGALQAF---SL 108
           +KA  +  F E    P   Q        QGR   + A TG+GKT A  L  L      S 
Sbjct: 12  LKAVAELKFVE----PTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLVDLSG 67

Query: 109 PRKETARPAPPPLTVLWLTPMRALAADTLRALQQPLEALGAEVHPWSTGARSGDTSSAER 168
           PR E        +  L L P R LA  TL+ +Q     L ++     +G  +G     E+
Sbjct: 68  PRVE--------IRALILLPTRELAQQTLKQVQ-----LFSQFTYIKSGLVTGGEDFKEQ 114

Query: 169 SAQNQRLPSVLVTTPESLSLLLARADANEV-LGSVRLAVVDEWHELLGNKRGVQVQLALA 227
           +A  +++P VL+ TP     LL + +A  + L  V++ ++DE   +L       ++    
Sbjct: 115 AAMLRKVPDVLIGTP---GRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDMERLCK 171

Query: 228 RLRRWNPGMTVWGMSATLGN--LKEAMHALLGHEEGVLVQGQVPKKLVIDSLLPGRAERF 285
                   +     SAT G   L++ +  +L   E +++         +  L  G  ++ 
Sbjct: 172 ECENREQTLL---FSATTGGAALRDIIGKVLKDPEHLMLNS-------VSQLAEGTRQQI 221

Query: 286 PWGGHLGLTMLPQVIEEIAASKT---TLVFTNTRSQSEIWYQALLEARPEWAGSIALHHG 342
               H       Q+ + + A++T    ++FTNTR+ ++  Y  L+    +      + HG
Sbjct: 222 ITADHD--QHKEQIAQWLLANETFDKAIIFTNTRAMADRIYGHLVAKDVK----AFVLHG 275

Query: 343 SLDREVREWVELGLKSGELKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLLQRAGRSG 402
             D++ R+      K G  K +V T     G+D   ++ V+    P+     + R GR+G
Sbjct: 276 EKDQKDRKLAIERFKQGSSKVLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTG 335

Query: 403 HAPGRPSRITLVPTHS 418
            A G    I+L+ TH+
Sbjct: 336 RAGGEGLAISLI-THN 350