Pairwise Alignments

Query, 918 a.a., ATP-dependent, 3'-5' DNA helicase with strand annealing activity from Variovorax sp. SCN45

Subject, 816 a.a., ATP-dependent helicase, DEAD box family from Pseudomonas putida KT2440

 Score = 1016 bits (2626), Expect = 0.0
 Identities = 525/823 (63%), Positives = 637/823 (77%), Gaps = 22/823 (2%)

Query: 57  DAWFAERGWKPFKFQRDVWKAIAQGRSGLLHATTGAGKTYAVWLGALQAFSLPRKETARP 116
           +AWFA+RGWKPF FQR VW A+ +G SGLLHA+TGAGKTYAVWL AL+AF  PR +    
Sbjct: 9   NAWFAKRGWKPFAFQRRVWAAVERGESGLLHASTGAGKTYAVWLAALRAFK-PRPQGRHL 67

Query: 117 APPPLTVLWLTPMRALAADTLRALQQPLEALGAEVHPWSTGARSGDTSSAERSAQNQRLP 176
           AP  + VLW+TPMRALAADT RALQ PL+ L     PWS G RSGDT+SAER+ Q +RLP
Sbjct: 68  AP--IQVLWVTPMRALAADTARALQAPLDELQL---PWSVGVRSGDTNSAERARQARRLP 122

Query: 177 SVLVTTPESLSLLLARADANEVLGSVRLAVVDEWHELLGNKRGVQVQLALARLRRWNPGM 236
           SVL+TTPESL+LLL RA A E   +++L VVDEWHELLGNKRGVQ+QLALARLR W+PG+
Sbjct: 123 SVLITTPESLTLLLTRAKAREDFATLQLVVVDEWHELLGNKRGVQLQLALARLRHWHPGL 182

Query: 237 TVWGMSATLGNLKEAMHALLGHEEGVLVQGQVPKKLVIDSLLPGRAERFPWGGHLGLTML 296
             WG+SATLGNL+ A   LL  + G+LVQG+  K L +D+LLP   ERFPW GH+GL ML
Sbjct: 183 PTWGLSATLGNLQHARDVLLP-QGGLLVQGRQDKALQVDTLLPKAIERFPWAGHMGLKML 241

Query: 297 PQVIEEIAASKTTLVFTNTRSQSEIWYQALLEARPEWAGSIALHHGSLDREVREWVELGL 356
            QV  EI AS ++LVFTNTR+Q+EIWYQALLEARP+WAG IALHH SL R+ R+WVE  L
Sbjct: 242 DQVCHEIDASASSLVFTNTRAQAEIWYQALLEARPDWAGLIALHHASLARDTRDWVERSL 301

Query: 357 KSGELKAVVCTSSLDLGVDFLPVERVLQIGSPKGVARLLQRAGRSGHAPGRPSRITLVPT 416
           K G LKAV+CTSSLDLGVDFLPVERVLQIGS KG+ARL+QRAGRSGHAPGR SR+TLVPT
Sbjct: 302 KQGSLKAVICTSSLDLGVDFLPVERVLQIGSAKGIARLMQRAGRSGHAPGRRSRVTLVPT 361

Query: 417 HSIEMVEGAAARAAIAEGHIEARHSPDQPLDVLVQHLVTVALGGGFLPDDLYAEVRGTAA 476
           HS+E+VE AAAR A+  GHIEAR SP   +DVLVQHLV++ALG GF P+ L AEVR T A
Sbjct: 362 HSLELVEAAAARQALLAGHIEARFSPRLCMDVLVQHLVSMALGSGFRPEQLLAEVRSTWA 421

Query: 477 YENLSRESWQWCLDFVSQGGPSLSAYPDYRRAVPDAEGVWRVPDARLARRHRMNIGTIVS 536
           +  L    WQW LDFV  GG SL+AYPDY+R    A+GV+RV   RLARRHRM IGTIVS
Sbjct: 422 FRQLRDSQWQWALDFVCHGGSSLTAYPDYQRVERQADGVYRVTSERLARRHRMGIGTIVS 481

Query: 537 DASMSVQF----VGGAKIGSVEESFVARMKPGDCFLFGGRLLELVRIHDMTAWVRRASGK 592
           DA++ +++     GG  +GSVEE+F+AR++PGD  +F GR+LELVR+ +MTA+VRR++ +
Sbjct: 482 DANLQLKYWSKGGGGKTLGSVEEAFIARLRPGDTLVFAGRVLELVRVENMTAYVRRSTAR 541

Query: 593 RPAVPRWNGGRMPLSNTLADAVVRQLALAGDGAYDSPELQCVRPLLEIQQQWSALPTPHT 652
           + AV RWNGGRMPLS+ LADA+V QL  A    ++ PE++ VRPLL +Q QWSALPT  T
Sbjct: 542 KAAVARWNGGRMPLSSELADALVEQLDAAAHERFEGPEMRAVRPLLALQAQWSALPTTST 601

Query: 653 LLAETLATREGSHLFLYPFAGRHVHLGLASLLAWRVAQHEARTFSIAVNDYGFELLSATE 712
           LLAET  +R+G HLFLYPFAGR  +LGLA+L+AWRV++ +  + SIAVNDYGFELLS  +
Sbjct: 602 LLAETFKSRQGWHLFLYPFAGRMANLGLANLIAWRVSRAQPLSVSIAVNDYGFELLSPAQ 661

Query: 713 VDWPALLPQVLRLPEGNGEAGGADAALLHEVLASLNAGELAQRRFREIARVSGLVFQGYP 772
           VDW + LPQ L         G AD  LL +VLASLNAGE+A RRFREIA+++GLVF GYP
Sbjct: 662 VDWASHLPQAL---------GTAD--LLEDVLASLNAGEMALRRFREIAQIAGLVFGGYP 710

Query: 773 GEKRSSRQLQASSSLFWEVFRKYDPDNRLLQQAEQELLAQELEIGRLRASLVRMAGQQLV 832
             ++S+RQ+QASS LF+EVFRK+D  N LL QA  E+L++ELEI RL   L++M+  QL 
Sbjct: 711 AAQKSTRQIQASSGLFYEVFRKHDAGNLLLGQARDEVLSEELEIERLHRQLLKMSELQLD 770

Query: 833 LKPLARPTPFSFPLMVELFREKLSNESVADRIARMVEQLEKAA 875
           L+ L RP P +F L+VE  RE LS E +ADRIARMV +LE+AA
Sbjct: 771 LQALRRPGPLAFALLVEGMRETLSTEKLADRIARMVAELEQAA 813