Pairwise Alignments

Query, 918 a.a., ATP-dependent, 3'-5' DNA helicase with strand annealing activity from Variovorax sp. SCN45

Subject, 1538 a.a., putative ATP-dependent helicase from Escherichia coli BL21

 Score =  234 bits (597), Expect = 3e-65
 Identities = 237/870 (27%), Positives = 364/870 (41%), Gaps = 109/870 (12%)

Query: 59  WFAERGWKPFKFQRDVWKAIAQGRSGLLHATTGAGKTYAVWLGALQAFSLPRKETARPAP 118
           WF     +P   Q   W   A+    L+ A TG+GKT A +L AL        E  R A 
Sbjct: 22  WFLRAFKQPTAVQPQTWHVAARSEHALVIAPTGSGKTLAAFLYALDRLFREGGEDTREAH 81

Query: 119 PPLT--VLWLTPMRALAADTLRALQQPLEALGAEVHPWS-------TGARSGDTSSAERS 169
              T  +L+++P++AL  D  R LQ PL+ +  E             G R+GDT + ERS
Sbjct: 82  KRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRVGIRTGDTPAQERS 141

Query: 170 AQNQRLPSVLVTTPESLSLLLARADANEVLGSVRLAVVDEWHELLGNKRGVQVQLALARL 229
              +  P +L+TTPESL L+L  + A E L  V   ++DE H + G+KRG  + L+L RL
Sbjct: 142 KLTRNPPDILITTPESLYLMLT-SRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERL 200

Query: 230 RRW-NPGMTVWGMSATLGNLKEAMHALLGHEEGVLVQGQ-------------VPKKLVID 275
               +      G+SAT+ +  +   A LG +  V V                V     + 
Sbjct: 201 DALLHTSAQRIGLSATVRSASDVA-AFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVS 259

Query: 276 SLLPGRAERFPWG--GHLGLTMLPQVIEEIAASKTTLVFTNTRSQSEIWYQALLE---AR 330
           S+  G  E    G  G +   +   +++E+   ++T+VFTN+R  +E     L E   AR
Sbjct: 260 SVASGTGEDSHAGREGSIWPYIETGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAAR 319

Query: 331 PEWAGSIAL--------------------------HHGSLDREVREWVELGLKSGELKAV 364
            + + SIA+                          HHGS+ +E R   E  LKSGEL+ V
Sbjct: 320 LQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCV 379

Query: 365 VCTSSLDLGVDFLPVERVLQIGSPKGVARLLQRAGRSGHAPGRPSRITLVPTHSIEMVEG 424
           V TSSL+LG+D   V+ V+Q+ +P  VA  LQR GR+GH  G  S+    P    ++V+ 
Sbjct: 380 VATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLVDS 439

Query: 425 AAARAAIAEGHIEARHSPDQPLDVLVQHLVTVALGGGFLPDDLYAEVRGTAAYENLSRES 484
           A     +  G +E    P  PLDVL Q  V  A       D+ Y+ VR  A +++L R  
Sbjct: 440 AVIVECMFAGRLENLTPPHNPLDVLAQQTVAAAAMDALQVDEWYSRVRRAAPWKDLPRRV 499

Query: 485 WQWCLDFVSQGGPSLSAYPDYRRAVPDAEGVWRVPDARLARRHRMNI------GTIVSDA 538
           +   LD +S   PS     D+    P    VW      L  R    +      GTI    
Sbjct: 500 FDATLDMLSGRYPS----GDFSAFRPKL--VWNRETGILTARPGAQLLAVTSGGTIPDRG 553

Query: 539 SMSV------QFVGGAKIGSVEESFVARMKPGDCFLFGGRLLELVRIHDMTAWVRRASGK 592
             SV      +  G  ++G ++E  V   +  D    G     + +I      V  A G+
Sbjct: 554 MYSVLLPEGEEKAGSRRVGELDEEMVYESRVNDIITLGATSWRIQQITRDQVIVTPAPGR 613

Query: 593 RPAVPRWNGGRMPLSNTLADAVVRQLALAGDGAY----------DSPELQCVRPLLEIQQ 642
              +P W G        L + +   L L  DGA+          +   +  ++ L+E Q+
Sbjct: 614 SARLPFWRGEGNGRPAELGEMIGDFLHLLADGAFFSGTIPPWLAEENTIANIQGLIEEQR 673

Query: 643 QWSAL-PTPHTLLAETLATREGS-HLFLYPFAGRHVHLGLASLLAWRVAQHEARTFSIAV 700
             + + P    L+ E      G   + L+   GR VH   A  +A R+        S+  
Sbjct: 674 NATGIVPGSRHLVLERCRDEIGDWRIILHSPYGRRVHEPWALAIAGRIHALWGADASVVA 733

Query: 701 NDYGFELLSATEVDWPALLPQVLRLPEGNGEAGGA------DAALLHEVLASLNAGELAQ 754
           +D G                 V R+P+ +G+   A         LL  V  ++ +  L  
Sbjct: 734 SDDGI----------------VARIPDTDGKLPDAAIFLFEPEKLLQIVREAVGSSALFA 777

Query: 755 RRFREIARVSGLVFQGYPGEKRSSRQLQASSSLFWEVFRKYDPDNRLLQQAEQELLAQEL 814
            RFRE A  + L+    PG +    Q +  +S   E+ + Y PD  ++ +  +E L    
Sbjct: 778 ARFRECAARALLMPGRTPGHRTPLWQQRLRASQLLEIAQGY-PDFPVILETLRECLQDVY 836

Query: 815 EIGRLRASLVRMAGQQLVLKPLARPTPFSF 844
           ++  L   + R+ G ++ +  +   TP  F
Sbjct: 837 DLPALERLMRRLNGGEIQISDVTTTTPSPF 866