Pairwise Alignments

Query, 551 a.a., ATP-dependent DNA ligase (EC 6.5.1.1) LigC from Variovorax sp. SCN45

Subject, 552 a.a., putative DNA ligase, ATP-dependent from Pseudomonas putida KT2440

 Score =  748 bits (1930), Expect = 0.0
 Identities = 382/555 (68%), Positives = 438/555 (78%), Gaps = 10/555 (1%)

Query: 1   MKAFAALYRELDASTSNLAKQAALQRYLREADAADAAWAVYFLAGGKPRQLVPTKLLRLL 60
           MKAFA L+  LDA+TS+ AK  AL+ Y   A A DAAWAVYFLAGG+PRQLVPT+LLR L
Sbjct: 1   MKAFATLFLRLDATTSSNAKLEALRDYFDMAPAEDAAWAVYFLAGGRPRQLVPTRLLREL 60

Query: 61  AQESAGLPEWLFDESYDAVGDLAETIALLLPPPSEVHDLGLAGWVEQHLLPLRDAAKASP 120
           A   AGLP+WLF+ESY AVGDLAETI+LLLP  ++ ++ GLA WVEQHLLPLR     +P
Sbjct: 61  ATTLAGLPDWLFEESYQAVGDLAETISLLLPLHADGNEEGLATWVEQHLLPLRGL---TP 117

Query: 121 DQLADRLRAQWRQLAAEERLVYFKLITGAFRVGVSKLQVTQALAAVGGIDAKRVAQRLMG 180
           +Q+  RL   W +L     ++  KLITG+FRVGVSKL VT+ALA + G+DAKRVAQRL+G
Sbjct: 118 EQVRQRLPPLWARLDRASLMLCLKLITGSFRVGVSKLLVTRALAQLAGLDAKRVAQRLVG 177

Query: 181 YTHIGARPQADDYRALIAPESGMEQVQKTSGQPYPFFLAHPFNLPLDQFDAVLGPPSDWI 240
           YT IG RP A  Y+ LIAPES  E  Q+  GQPYPFFLAHP  +  DQFD +LGPPSDW 
Sbjct: 178 YTDIGHRPTAASYQRLIAPESADEHNQR-GGQPYPFFLAHPLQVSSDQFDTLLGPPSDWQ 236

Query: 241 VEWKWDGIRAQLVKRAGVAWVWSRGEELVTERFPELAALGEALPDGTVLDGEIAVWRDGK 300
           +EWKWDGIRAQ+VKR G  WVWSRGEELVTERFPEL  L + LPDG VLDGEI VW+ G+
Sbjct: 237 IEWKWDGIRAQVVKRDGQLWVWSRGEELVTERFPELHGLAQTLPDGVVLDGEILVWKPGE 296

Query: 301 ------VQPFAELQKRIGRKTLGAKLLRDIPVVLLAYDLLEWEGQDLRALPQSRRRVLLD 354
                 VQPFA LQ+RIGRKTLG KLL D PVVL AYDLLEW+G+D R+ PQ  RR  L+
Sbjct: 297 TETELAVQPFALLQQRIGRKTLGKKLLNDAPVVLQAYDLLEWQGEDWRSRPQHERRSQLE 356

Query: 355 ELVARMRHPSLLPSPMLEGADWTDLATQREAARTMGVEGMMLKRRDAQYGVGRTKDVGVW 414
            LV       +L SP+L+G DW DLA QRE +R++GVEG+MLK+R+A YGVGRTKD+G+W
Sbjct: 357 HLVDEHPLAPVLLSPLLQGPDWADLARQREQSRSLGVEGLMLKQREALYGVGRTKDMGIW 416

Query: 415 WKWKIDPLSIDAVLIYAQRGHGRRASLFSDYTFAVWDSPPGQEDRKLVPFAKAYSGLTDA 474
           WKWKIDP S+DAVLIYAQRGHGRRASL+SDYTFAVWD+P G   R LVPFAKAYSGL+D 
Sbjct: 417 WKWKIDPFSVDAVLIYAQRGHGRRASLYSDYTFAVWDAPAGTPGRALVPFAKAYSGLSDE 476

Query: 475 EMARVDAIIRKTTVESFGPVKSVKPTLVFELGFEGIARSTRHKSGIAVRFPRMLRWREDK 534
           EM +VDAIIRKTTVE+FGPV+SV PTLVFELGFEGIA S RHKSGIAVRFPRMLRWR DK
Sbjct: 477 EMRKVDAIIRKTTVETFGPVRSVTPTLVFELGFEGIALSRRHKSGIAVRFPRMLRWRLDK 536

Query: 535 PVEEADTLQTLAALL 549
           PVEEAD L TL ALL
Sbjct: 537 PVEEADDLATLQALL 551