Pairwise Alignments

Query, 360 a.a., mRNA 3-end processing factor from Variovorax sp. SCN45

Subject, 338 a.a., conserved protein of unknown function from Pseudomonas putida KT2440

 Score =  528 bits (1360), Expect = e-155
 Identities = 248/329 (75%), Positives = 279/329 (84%)

Query: 8   DLVVARPEGLYCPPGDFYIDPWRPVARAVITHAHSDHARTGHAHYLAHTDSAGTLRTRLG 67
           DLV+ARPEGLYCPPGDFYIDPWRPV RAVITH H DHARTG+ HYL  +  AG LR+RLG
Sbjct: 2   DLVIARPEGLYCPPGDFYIDPWRPVERAVITHGHGDHARTGNGHYLTASPGAGILRSRLG 61

Query: 68  ADIDLQTLAYGEAISHHGVRVSLHPAGHVLGSAQVRLEHGGRVWVASGDYKTEPDGTCAP 127
            DI+LQTL YGE + HHGV +SLHPAGHVLGSAQVRLE+ G VWVASGDYK EPDGTC P
Sbjct: 62  QDINLQTLPYGERLLHHGVTLSLHPAGHVLGSAQVRLEYRGEVWVASGDYKVEPDGTCTP 121

Query: 128 FEPVPCDTFITESTFGLPINRWPTQAALFAEIDAWWRANAEAGRASVLFCYAFGKAQRIL 187
           FEPV C TFITESTFGLPI RWP+Q+ +FA I+AWWRAN+E G+ASVLFCYAFGKAQRIL
Sbjct: 122 FEPVACHTFITESTFGLPIYRWPSQSEIFASINAWWRANSEQGKASVLFCYAFGKAQRIL 181

Query: 188 HGVDAGIGPIVVHGAVEPLNAVYRAAGVALPPTLRVSDAGVDAALLKRALVLAPPSAQGT 247
           HG+DA IGPI+VHGA+EPLN VYR AG+ LP T    D   +  LL++ALVLAPPSA G+
Sbjct: 182 HGLDASIGPILVHGAMEPLNRVYRDAGIRLPETRYAGDIPRNDPLLRQALVLAPPSAGGS 241

Query: 248 PWMKRFGNYADAFASGWMQLRGTRRRRGVDRGFVMSDHADWPGLQQAIAGTGAQRVFVTH 307
            WM+RFG+Y+DAFASGWM LRG RRRRGVDRGFV+SDHADWPGL  AI  TGAQRV VTH
Sbjct: 242 SWMRRFGDYSDAFASGWMLLRGARRRRGVDRGFVLSDHADWPGLLWAIGQTGAQRVMVTH 301

Query: 308 GSVQVMVRWLSENGLDAQGFKTEYGDEDD 336
           GSV+V+VR+L+E GLDA+ F TEYGDEDD
Sbjct: 302 GSVEVLVRYLTEQGLDARAFVTEYGDEDD 330