Pairwise Alignments

Query, 320 a.a., ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

Subject, 308 a.a., rhizopine-binding protein from Pseudomonas simiae WCS417

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 85/313 (27%), Positives = 140/313 (44%), Gaps = 18/313 (5%)

Query: 7   RLALTAVAAAAFASLPALAAEKVNLGVSIPAATHSFMGGINYWANQAKKDLEKEHKDLKI 66
           R +L A       S  + AA ++  GVSI     +FM  +      A +      +D++I
Sbjct: 3   RYSLFAATLLLLFSQWSFAAYRI--GVSIARVDDNFMTYVRTGLEAAARQ-----QDVQI 55

Query: 67  TIKTA-ANAPEQANQLQDLSTVTKINALVVFPFESAALTKPVAQVKAKGAYVTVVDRGLT 125
             + A  +   Q NQ++      K++A++V P ++AA         A    +  V+R   
Sbjct: 56  QFEDAQGDVVRQLNQVEGFLN-QKVDAVIVLPVDTAATANMTRAAVAAKTPLVYVNRHPD 114

Query: 126 DTSAQDAYV--AGDNTAFGKIPAEYIVKQLNGKGNVVALRG-IATTLDNERMDAFNAVLK 182
           + +     V  A ++   G++   Y+ ++L GKGNV  + G +A    ++R +    VLK
Sbjct: 115 ERTLPKGVVTVASNDIEAGQLQMRYLAEKLAGKGNVAIIMGDLAQNATHDRTEGAKQVLK 174

Query: 183 GSPDIKLLDAKYANWNRDDAFKVTQDYLTRFKNIDAIWAADDDMAVGVLKAISQA--KRD 240
             P IK+++ + A+W R     +T ++L      DAI A +D+MA+G   A+ QA   + 
Sbjct: 175 DFPGIKVVEQQSADWQRSKGMDLTSNWLLAGTQFDAIVANNDEMAIGAAMALQQAGKAKG 234

Query: 241 DIKIVFGGAGAKDMVKTIMDGKDPRITADVSYSPKFIYDAIKLTAEARLKGEKLPATTII 300
           D+ IV G  G  D +  I  G    +TA V   PK         A   +KGE +     +
Sbjct: 235 DVAIV-GIDGLPDGLAAIKRG---LLTASVFQDPKAQATQAVQAAVRMIKGEAIEPEVWV 290

Query: 301 PSVLITKENAKEF 313
           P  LI  E    F
Sbjct: 291 PFELIKPEQVAVF 303