Pairwise Alignments

Query, 320 a.a., ABC transporter, substrate-binding protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

Subject, 309 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 99.4 bits (246), Expect = 1e-25
 Identities = 84/314 (26%), Positives = 143/314 (45%), Gaps = 18/314 (5%)

Query: 13  VAAAAFASLPALAAEKVNLGVSIPAATHSFMGGINYWANQAKKDLEKEHKDLKITIKTAA 72
           +  AA + L   AA    +GVS+     +F+  +         D  KE K + + ++ A 
Sbjct: 5   IIGAAMSVLLGTAAHAETVGVSMALFDDNFLTVLR----NGMLDYSKELKGVTLQVEDAQ 60

Query: 73  N-APEQANQLQDLSTVTKINALVVFPFES---AALTKPVAQVKAKGAYVTVVDRGLTDTS 128
           N   +Q +Q+Q+    +K++A++V P ++   AA++K  A  K    YV      +    
Sbjct: 61  NDVAKQQSQIQNF-IASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNVDSLP 119

Query: 129 AQDAYVAGDNTAFGKIPAEYIVKQLNGKGNVVALRG-IATTLDNERMDAFNAVLKGS--P 185
              A+VA D T  G + A+ + + L GKGN V + G ++      R  +   VLK     
Sbjct: 120 DGQAFVASDETVAGTLEAKEVCRLLGGKGNAVIMMGELSNQAARMRTQSAKDVLKTDECK 179

Query: 186 DIKLLDAKYANWNRDDAFKVTQDYLTRFKNIDAIWAADDDMAVGVLKAISQAKRDDIKIV 245
            I +++ + ANW R     +  ++L+     +A+ A +D+MA+G ++A+  A +D    V
Sbjct: 180 GISVVEEQTANWQRTQGSDLVTNWLSSGIEFNAVIANNDEMAIGAIQALKAAGKDMKSYV 239

Query: 246 FGGAGAKDMVKTIMDGKDPRITA--DVSYSPKFIYDAIKLTAEARLKGEKLPATTIIPSV 303
             G  A       M   D  +T   D +   K   DA    A   +KG+K+     IP  
Sbjct: 240 VAGVDATQDALAAMQAGDLDVTVFQDAAGQGKGALDA----ALKLVKGDKIEKKVYIPFQ 295

Query: 304 LITKENAKEFYHPN 317
           L+T EN K++   N
Sbjct: 296 LVTPENVKDYVAKN 309