Pairwise Alignments

Query, 515 a.a., ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) / ABC transporter, ATP-binding protein (cluster 2, ribose/xylose/arabinose/galactose) from Variovorax sp. SCN45

Subject, 512 a.a., ribose ABC transporter - ATP-binding subunit from Pseudomonas putida KT2440

 Score =  354 bits (909), Expect = e-102
 Identities = 207/495 (41%), Positives = 291/495 (58%), Gaps = 9/495 (1%)

Query: 15  VEFDGVVKAFGPVQVLHGVSFALAPGRVYGLLGENGAGKSTLMKILAGYEQLTGGTLRIN 74
           +E  G+VK FG  + L G S  +A G V+GL+GENGAGKSTL+K+LAG  +   G+L ++
Sbjct: 6   LELRGIVKTFGATRALDGASLRVAAGSVHGLVGENGAGKSTLIKVLAGIHRPDAGSLLLD 65

Query: 75  GQPQQFGSSRDAEALGIVLIHQEFNLAEDLSVAQNIFLGHEKKKGWLLDDAAMEREAAAA 134
           GQP    S R  E LGI  IHQE  L    +V + +F GHE++ G LLD  + +REAA  
Sbjct: 66  GQPHGHFSPRQVERLGIGFIHQERLLPARFTVGEALFFGHERRFGPLLDRRSQQREAARL 125

Query: 135 L-SAVGLNIDPRTKVRKLIVAEKQLVEIAKAIARRARLLVMDEPTATLTPGETERLFKLI 193
           L    GL +     + +L  AE+Q+V+I +A+  + R+LV DEP+  L   E ERL +++
Sbjct: 126 LDDYFGLRLPANALIGELSSAEQQMVQIVRALLIKPRVLVFDEPSVALVQREVERLLRIV 185

Query: 194 AQLRADGVTIVYISHKLDEVEQVTDEVIVMRDGRFVARAPTPEVTRQQMANLMVGRELAD 253
            +LR DG+ IVYISH L E+E + D V V+R+GR VA       + +Q+  LMV RE+ +
Sbjct: 186 QRLRDDGLAIVYISHYLQEIEALCDRVTVLRNGRDVAEVSPRNTSLEQITRLMVNREVGE 245

Query: 254 LYPPRDVVVAADAPAMRVRDFNVPGWAQDASFEVRPGEILGFAGLVGAGRTELFEGLLGL 313
           LYP   V V A A  + VR        Q    +VR GEI+G  GLVG+G  EL   L GL
Sbjct: 246 LYP--KVAVPAGALLLDVRGLGRARAYQGIDLQVRRGEIVGLTGLVGSGAKELLRSLFGL 303

Query: 314 RPA-SGNVEMLGKPVPGGKGWRNPRDAAKHGLTYLSEDRKGKGLHVNFGLRQNLTLMALE 372
            P  SG V + G+P+      R+PR+A   G+  + E+R+ +G+ ++  +++N TL AL 
Sbjct: 304 APPDSGEVRLDGQPL----SLRSPREAVAQGVALMPEERRRQGVALDLSVQENTTLAALS 359

Query: 373 RYAQ-PWLRPEAERGALAGAVKEYGIRTGSLEVKASSLSGGNQQKLALAKVLQPRPKVVV 431
           R+ +   L P  ER      ++   I+      K   LSGGNQQK+ALAK       + +
Sbjct: 360 RFVRLGLLSPARERHTTLELIERLRIKAHGAHAKVRQLSGGNQQKVALAKWFARCSSLYL 419

Query: 432 LDEPTRGVDVGAKRDIYFLIQRLAREGLAVIVVSSELMELIGLCHRVAVMRAGRLVATLD 491
           LDEP+ G+DVGAK +IY LI  L +EG  V+++SS+L ELIGLC R+ VM  G + A   
Sbjct: 420 LDEPSVGIDVGAKVEIYRLIGELVKEGAGVLILSSDLPELIGLCDRIHVMHRGAIAARFA 479

Query: 492 ADHLTEEELIAHATG 506
           A     + L+A ATG
Sbjct: 480 AGEANSDRLLAVATG 494



 Score = 90.1 bits (222), Expect = 2e-22
 Identities = 65/238 (27%), Positives = 110/238 (46%), Gaps = 6/238 (2%)

Query: 21  VKAFGPVQVLHGVSFALAPGRVYGLLGENGAGKSTLMKILAGYEQLTGGTLRINGQPQQF 80
           V+  G  +   G+   +  G + GL G  G+G   L++ L G      G +R++GQP   
Sbjct: 261 VRGLGRARAYQGIDLQVRRGEIVGLTGLVGSGAKELLRSLFGLAPPDSGEVRLDGQPLSL 320

Query: 81  GSSRDAEALGIVLIHQEFN---LAEDLSVAQNIFLGHEKK--KGWLLDDAAMEREAAAAL 135
            S R+A A G+ L+ +E     +A DLSV +N  L    +  +  LL  A         +
Sbjct: 321 RSPREAVAQGVALMPEERRRQGVALDLSVQENTTLAALSRFVRLGLLSPARERHTTLELI 380

Query: 136 SAVGLNID-PRTKVRKLIVAEKQLVEIAKAIARRARLLVMDEPTATLTPGETERLFKLIA 194
             + +       KVR+L    +Q V +AK  AR + L ++DEP+  +  G    +++LI 
Sbjct: 381 ERLRIKAHGAHAKVRQLSGGNQQKVALAKWFARCSSLYLLDEPSVGIDVGAKVEIYRLIG 440

Query: 195 QLRADGVTIVYISHKLDEVEQVTDEVIVMRDGRFVARAPTPEVTRQQMANLMVGRELA 252
           +L  +G  ++ +S  L E+  + D + VM  G   AR    E    ++  +  G + A
Sbjct: 441 ELVKEGAGVLILSSDLPELIGLCDRIHVMHRGAIAARFAAGEANSDRLLAVATGAQRA 498