Pairwise Alignments

Query, 398 a.a., Outer membrane protein romA from Variovorax sp. SCN45

Subject, 356 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  217 bits (553), Expect = 4e-61
 Identities = 144/384 (37%), Positives = 187/384 (48%), Gaps = 44/384 (11%)

Query: 10  ALCAGGLLAACSTPPNPYYDASRRHHRPDGFQDNYVDFKPKNFFTDVLLGWQIPSWFKGL 69
           AL  GGL A  S+  + YY      H       N     P NF    LL W+        
Sbjct: 16  ALAGGGLYARRSSA-SAYYSGPISDHFDGVRFFNPGGTPPGNFMG--LLKWRFNGERATW 72

Query: 70  PPAPEAPPPVVAPDLAFIASNAGARTQPAATFIGHATVLVQVPTANGGLNVLTDPVFGER 129
           P    +P P   P+      +         TF+GHA+ L+Q      GLN+L DPV+ +R
Sbjct: 73  PETYPSPFPFAKPEARIDGRDM------RVTFVGHASFLIQT----AGLNILVDPVWSQR 122

Query: 130 VSPVSFAGPKRFQPPGVALKELPHIDLVLISHNHYDHLDEDSVKALDAQAGGPPLFVVPL 189
            SP+SFAGPKR  PPG+  ++LP IDLVL++HNHYDHLD +++K L       PLF+ PL
Sbjct: 123 TSPLSFAGPKRVNPPGIRFEDLPPIDLVLVTHNHYDHLDMETLKRL--HVAHKPLFITPL 180

Query: 190 GIKPWLAARGITNAVELDWWDSVTLPAAPSAQPLVQRNGAGIAAGATGDAVQVFLTPAQH 249
           G                   D+V      +A+  V   G  +  G    +V++   P  H
Sbjct: 181 GN------------------DAVIRTGVEAARIKVGDWGDVVETG----SVKIHFEPCHH 218

Query: 250 WSARGLGDRMKTLWGGFALLSPKLHVFYSGDTGYSKDFADIQARLAPRQANAQGGGFDLA 309
           WSARGL DR   LW  F + +P   +++ GDTG+ +        L    A  + G F LA
Sbjct: 219 WSARGLNDRSMALWAAFVIETPGGKIYHIGDTGFHEG-------LNYGAARKKHGEFRLA 271

Query: 310 LLPVGAYEPRWFMKDQHVNPDESVRIHRELHAKRSLGVHWGTFSLTDEALDQPPKDLAAA 369
            LP GAYEPRWFMK QH NP E+V   R   A    G HWGT  LTDEA+D P   L AA
Sbjct: 272 NLPFGAYEPRWFMKGQHQNPAEAVEGMRLCGAAHVCGHHWGTVQLTDEAVDAPLAALKAA 331

Query: 370 RKAQGVADDAFFTLAIGETRKLPA 393
              QGV +  F  +  GE   +P+
Sbjct: 332 LTEQGVEESRFRPMRPGEVFDVPS 355