Pairwise Alignments

Query, 388 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 370 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Variovorax sp. SCN45

 Score = 99.4 bits (246), Expect = 1e-25
 Identities = 96/381 (25%), Positives = 163/381 (42%), Gaps = 18/381 (4%)

Query: 2   KLKTLTTLAVLGLIATLASAQQQQGVTKDEIRIGTIQDLSGPLAGFGKQARNGMQLRVDE 61
           K + L   A+L   A  ASAQ         + IG    ++G +A    +   G QL +D 
Sbjct: 3   KTRMLCAAALLAFSAVGASAQ---------LLIGQTAGMTGSVAASVNETIGGAQLVIDA 53

Query: 62  LNEQGSVNGRKLKLFVEDSGYDPKKAVLAAQKLVNQEKIFIMAGHIGTAQNMAAMPVQFD 121
           +N QG + G K+++   D G+D K+A   A+ L+  +K+  +    GT  + A +P    
Sbjct: 54  VNAQGGLYGEKIEVLRMDDGFDVKRASDNARTLIEDKKVLALFMSRGTPHSQAIIPWLDK 113

Query: 122 KNVINYMPITAAREMYEPLNRLKYSFAATYYDQIRLALPKMIKDKGAKKVCTIYQDDEFG 181
            +V    P T A  +++PL +  ++  ATY  +   A+  ++   G  ++  +Y  D FG
Sbjct: 114 YDVALVGPSTGAMVLHKPLQKHVFNVRATYQREAEKAVQHLL-TIGLTRIAVVYVTDSFG 172

Query: 182 LEVQRGAEAGLKAAGMELTEKTSFKRGATDFSSQVAKMKAANCDLVV---LGTIIRETIG 238
            +   GA  G      + T      R   D+   V  +K AN   VV    G  + + I 
Sbjct: 173 QDALEGAMTGFTKGKAKPTATIPADRDKPDYKVIVPAIKEANAQAVVWIGSGVAVVDGIK 232

Query: 239 TVGEARKTGFNPTFLGSSAAYTDLIHKLGGKAMDGIYATMTVQNPYTDEQSQPLRFWANK 298
            +  A       T   S+ A +  I +L G A  G+  T    N  +  Q   ++     
Sbjct: 233 ALRAAGSAAQVVTL--SNNASSGFIKQL-GDASKGVIVTQVFPNERSLGQPM-VKEALTL 288

Query: 299 YKTKFNEDPTVFSVYGYVIIDSFIKAATKAGPNLTTDSFIKAMDSITFEPDMFGSPKSTY 358
            + K   + +  ++ G+      ++A  +AGP  T    I A++SI    D+ G    +Y
Sbjct: 289 AQAKGQSELSPAALEGFASAKVLVEALRRAGPKPTRAKVIAALESIK-GFDLGGGLDVSY 347

Query: 359 TATKRLGNDQSRLSQIKDGKW 379
           +     G D + LS I DG++
Sbjct: 348 SPQDHSGIDFADLSIISDGRF 368