Pairwise Alignments

Query, 388 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 378 a.a., branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) from Pseudomonas putida KT2440

 Score =  104 bits (259), Expect = 5e-27
 Identities = 82/326 (25%), Positives = 142/326 (43%), Gaps = 8/326 (2%)

Query: 14  LIATLASAQQQQGVTKDEIRIGTIQDLSGPLAGFGKQARNGMQLRVDELNEQGSVNGRKL 73
           L   +A+A       + +++IG    ++G  A FG+Q   G Q   D++N  G VNG K+
Sbjct: 11  LALAVATALGVSSYVQADVKIGVAGPMTGANAAFGEQYMKGAQAAADKINAAGGVNGEKI 70

Query: 74  KLFVEDSGYDPKKAVLAAQKLVNQEKIFIMAGHIGTAQNMAAMPVQFDKNVINYMPITAA 133
            L   D   +PK+AV  A +LV+Q+K+  + GH  ++  + A  V  +  VI   P +  
Sbjct: 71  VLVKGDDACEPKQAVAVANRLVDQDKVIGVVGHFCSSNTIPASEVYDEAGVIAITPGSTN 130

Query: 134 REMYEPLNRLKYSFAATYYDQIRLALPKMIKDKGAKKVCTIYQDDEFGLEVQRGAEAGLK 193
            ++ E      +        Q  +A   ++     KKV  ++  D +G  +    +A L+
Sbjct: 131 PQVTERGLSAMFRMCGRDDQQGIVAGDYIVDVLKGKKVAVLHDKDTYGQGLADATKAQLE 190

Query: 194 AAGMELTEKTSFKRGATDFSSQVAKMKAANCDLVVLGTIIRETIGTVGEARKTGFNPT-F 252
             G++        RG  DFS+ V K+++   D+V  G +  E    V + R+ G     F
Sbjct: 191 KRGVKPVLYEGLTRGEKDFSAVVTKIRSTGADVVYFGGLHPEAGPLVRQLREQGLKDVKF 250

Query: 253 LGSSAAYTD-LIHKLGG-KAMDGIYATMTVQNPYTDEQSQPLRFWANKYKTKFNEDPTVF 310
           +      TD L+   GG + +DG+Y T        D +  P      +   K   +P  +
Sbjct: 251 MSDDGIVTDELVSTAGGAQYVDGVYMTFG-----ADPRLLPDSKAVVEEFRKAGTEPEGY 305

Query: 311 SVYGYVIIDSFIKAATKAGPNLTTDS 336
           ++Y Y  + +   A   A  N   D+
Sbjct: 306 TLYAYASLQALAAAFNGAKSNKGEDA 331