Pairwise Alignments

Query, 291 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 290 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

 Score =  186 bits (471), Expect = 7e-52
 Identities = 106/284 (37%), Positives = 167/284 (58%), Gaps = 4/284 (1%)

Query: 2   QILQLLLSGIAQGCIYGLIALGFVLIYKATETVSFAQGDLMMLGAFGAFAGMSLFGMPFW 61
           + LQ  L+GI+ G IYG IA+GF +IY ++  V+FAQG+ +MLGA      +   G+P+ 
Sbjct: 3   EFLQFALAGISVGVIYGAIAVGFNIIYNSSHVVNFAQGEFVMLGAMTCVLLLGA-GLPYP 61

Query: 62  LAAILAVVAMAAFGVLLELVVIRSILGQPQFSIVMLTIGIAYVARGVITMVPGIGTETHT 121
           LAA LAV A A  G+LL  V IR     P   ++++TIG + + RG+   + G G  +  
Sbjct: 62  LAAFLAVAATAVVGLLLYDVAIRPAKNAPVIMLIIITIGASILIRGLARPIFGTGVASLP 121

Query: 122 LAVPYKDQIWKLGELVVNLEQLAIIIATAVLCGLLFAMFRYSKLGIAMQASSQNQLAAYY 181
             VP       +G  VV  + L ++  T     LL+   R + LG  + A+S + +AA  
Sbjct: 122 AVVPGASI--SIGGAVVQPQSLIVVAGTLGAVLLLWLFMRKTLLGKGLIAASSDPMAATL 179

Query: 182 MGIPVKRLNGLVWGLAAAVAAIAGMLLAPITFVHANMG-FIGLKAFPAAVVGGFGSLPGA 240
           MGI V  +  L + ++A++ A++G+L+API   +  MG  + LK F AA++GG GS+PGA
Sbjct: 180 MGIRVSNIVRLSFLISASLGAVSGILIAPIALANYEMGTLLALKGFAAAILGGMGSIPGA 239

Query: 241 IVGGLVIGIVESFAGFYLPDGFKDTAPYIVVLLMLMIKPNGLFG 284
           ++GGL++G+ E+ +  Y+   +KD   ++V++L L   PNGL G
Sbjct: 240 VLGGLLVGLSEAMSAGYISSDYKDATAFVVIMLALFFFPNGLVG 283