Pairwise Alignments

Query, 291 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 309 a.a., Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1) from Variovorax sp. SCN45

 Score =  146 bits (369), Expect = 5e-40
 Identities = 97/305 (31%), Positives = 172/305 (56%), Gaps = 23/305 (7%)

Query: 3   ILQLLLSGIAQGCIYGLIALGFVLIYKATETVSFAQGDLMMLGAFGAFA--GMSLFGMPF 60
           +LQ +++G+  G +Y LIALG+ ++Y     ++FA G+++M+GA  ++   G+   GMP 
Sbjct: 4   LLQQIINGLVLGSMYALIALGYTMVYGIINLINFAHGEVLMVGALTSWTIIGLMKDGMPN 63

Query: 61  ---WL----AAILAVVAMAAFGVLLELVVIRSILGQPQFSIVMLTIGIAYVARGVITMVP 113
              WL    A ++A +  A    ++E V  R +   P+ + ++  IG++ + + +  ++ 
Sbjct: 64  TPGWLILLIALVIACIVAATLNFVIEKVAYRPLRNSPKLAPLITAIGMSILLQTLAMIIW 123

Query: 114 GIGTETHTLAVPYKDQIWKLGELVVNLEQLAIIIATAVLCGLLFAMFRYSKLGIAMQASS 173
               + +   +P  D I   G  V++  Q+ I+  TA    +L  +  Y+KLG AM+A++
Sbjct: 124 KPTNKAYPNLLP-TDPIHVAGA-VISPTQVMILSVTAFSLVVLMWLVNYTKLGRAMRATA 181

Query: 174 QNQLAAYYMGIPVKRLNGLVWGLAAAVAAIAGMLLAPITFV--HANMGFI-GLKAFPAAV 230
           +N   A  MGI    +    + + A +AAIAG++ A    +  HA MGF+ GLKAF AAV
Sbjct: 182 ENPRVAALMGIRPDMVISATFIIGAVLAAIAGVMYASNYGIAQHA-MGFLPGLKAFTAAV 240

Query: 231 VGGFGSLPGAIVGGLVIGIVESFAGFY--------LPDGFKDTAPYIVVLLMLMIKPNGL 282
            GG G+L GA+VGG+++G++E+    Y        L   + D   +IV+++ML ++P+GL
Sbjct: 241 FGGIGNLAGAVVGGILLGLIEAIGSGYIGTITGGVLGSNYSDIFAFIVLIVMLTLRPSGL 300

Query: 283 FGEKL 287
            GE++
Sbjct: 301 LGERV 305