Pairwise Alignments

Query, 291 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score =  138 bits (348), Expect = 1e-37
 Identities = 90/303 (29%), Positives = 165/303 (54%), Gaps = 19/303 (6%)

Query: 4   LQLLLSGIAQGCIYGLIALGFVLIYKATETVSFAQGDLMMLGAFGAFAGMSL---FGMPF 60
           LQ L++G+  G +YGLIA+G+ ++Y     ++FA G++ M+ A+ A   ++L   FG+  
Sbjct: 6   LQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVES 65

Query: 61  WLAAILA-----VVAMAAFGVLLELVVIRSILGQPQFSIVMLTIGIAYVARGVITMVPGI 115
           +   +L      +V    +G  +E +  + +    + + ++  IGI+ + +    +  G 
Sbjct: 66  FPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQGA 125

Query: 116 GTETHTLAVPYKDQIWKLGELVVNLE--QLAIIIATAVLCGLLFAMFRYSKLGIAMQASS 173
             +     +    ++ ++G   V L   ++ I++A  V  GLL  + +Y+KLG   +A+ 
Sbjct: 126 RQQGVPTLLEGAMRV-EVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMCRATQ 184

Query: 174 QNQLAAYYMGIPVKRLNGLVWGLAAAVAAIAGMLLAPITFVHANMGF-----IGLKAFPA 228
           Q++  A  +GI   R+   V+ + A +AA+AG+L   IT  +    F     IG+KAF A
Sbjct: 185 QDRKMASILGINTDRVISYVFVIGAVMAALAGVL---ITMNYGTFDFYAGFIIGIKAFTA 241

Query: 229 AVVGGFGSLPGAIVGGLVIGIVESFAGFYLPDGFKDTAPYIVVLLMLMIKPNGLFGEKLR 288
           AV+GG GSLPGA++GG+++GI ES     +   +KD   + +++++L+ +P GL G  L 
Sbjct: 242 AVLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLGRPLV 301

Query: 289 KKV 291
            KV
Sbjct: 302 AKV 304