Pairwise Alignments

Query, 371 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 364 a.a., TRAP transporter solute receptor, unknown substrate 6 from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  136 bits (342), Expect = 1e-36
 Identities = 94/348 (27%), Positives = 161/348 (46%), Gaps = 15/348 (4%)

Query: 8   RRRGLLKGAAVAAGAMSVPMVSMAQ-TTSLRFQSTWPAKDIFHEYALD--YAKKVNDMAG 64
           R+  +  G   A   M  P ++    +   R+ S++P K +   Y +   +A++V+++  
Sbjct: 4   RKFAVTAGVGAAGAVMGAPAIAQQNPSVKWRWVSSYP-KTLATSYPMTQAFAQRVSELTD 62

Query: 65  NRLKIEVLPAGSVVPAFQLLDAVAKGTLDGGHGVVAYWYGKNSALALWGSGPGYGMDANM 124
            + +I++   G +V    +LDAV  G ++ G     ++YGK+   A +GS   +G++   
Sbjct: 63  GKFQIQLFGPGEIVAPLAVLDAVQSGAVEAGFTATFFYYGKDPTFA-FGSAIPFGLNTRQ 121

Query: 125 ILAWHTYGGGKALMDEIYKGLNLDVASYLYGPMPTQPLGWFKKPVAKAEDMKGLKFRTVG 184
             AW   GGG  L+++ +   N  V     G    Q  GW++K +   +D++GLK R  G
Sbjct: 122 HAAWMYAGGGLDLLNQFHA--NYGVHYVPMGFTGAQMGGWYRKEIKTVKDLEGLKMRISG 179

Query: 185 LAVDVFTDMGAAVNPLPGGEIVPALDRGLIDAAEFNNASSDRVLGFPDVAKNCMLQSFHQ 244
           +   V   +G     LP G++  AL+RGL+DAAE+ N   D +LG   VAK      + +
Sbjct: 180 IGGQVMQRLGVTPQQLPAGDVYAALERGLLDAAEYTNPIDDELLGMHKVAKYYYYPGWWE 239

Query: 245 SGEQFEVLFNGSKLKSLPPELKSIIEYATQAASADMSWKAID----RNSKDYEELKKAGI 300
              Q     N  K   LP   K     A QA + +     I+    +N+   + L   G+
Sbjct: 240 GSVQVGHFINQQKWAELPERYK----IAVQAVAREQEQAIINNYDAKNAAALKRLIALGV 295

Query: 301 KFYKTPDAVLRAQLASWDKTIAKKSAENPMFKKVLDSQRAFAERAGQW 348
                P  V+ A   +  + + + +++N  FKKV+D   AF   A  W
Sbjct: 296 NIKTFPREVMSAGYKATFEHMDELASKNANFKKVMDHYMAFRADALLW 343