Pairwise Alignments

Query, 371 a.a., TRAP-type C4-dicarboxylate transport system, periplasmic component from Variovorax sp. SCN45

Subject, 328 a.a., 2,3-diketo-L-gulonate-binding periplasmic protein from Escherichia coli BL21

 Score = 47.0 bits (110), Expect = 7e-10
 Identities = 64/259 (24%), Positives = 101/259 (38%), Gaps = 27/259 (10%)

Query: 56  AKKVNDMAGNR----LKIEVLPAGSVVPAFQLLDAVAKGTLDGGHGVVAYWYGKNSALAL 111
           AKK ND+   R    LK+++ P  ++  A  ++  V  GT+D          G N+   L
Sbjct: 44  AKKFNDLLQERTKGELKLKLFPDSTLGNAQAMISGVRGGTID------MEMSGSNNFAGL 97

Query: 112 WGSGPGYGMDANMILAWHTYGGGKALMDEIYKGLNLDVASYLYGPMPTQPLGW-----FK 166
               P   +     L   T    K L  ++   L   +       +     GW      +
Sbjct: 98  ---SPVMNLLDVPFLFRDTAHAHKTLDGKVGDDLKASLEGKGLKVLAYWENGWRDVTNSR 154

Query: 167 KPVAKAEDMKGLKFRTVGLAVDV--FTDMGAAVNPLPGGEIVPALDRGLIDAAE--FNNA 222
            PV    D+KGLK RT    +++  F   GA   P+P  E+   L+   IDA E   N  
Sbjct: 155 APVKTPADLKGLKIRTNNSPMNIAAFKVFGANPIPMPFAEVYTGLETRTIDAQEHPINVV 214

Query: 223 SSDRVLGFPDVAKNCMLQSFHQSGEQFEVLFNGSKLKSLPPELKSIIEYATQAASADMSW 282
            S +   F +V K   L   H +     V+ N +K   L PE +  +  + Q A      
Sbjct: 215 WSAK---FFEVQK--FLSLTHHAYSPLLVVINKAKFDGLSPEFQQALVSSAQEAGNYQRK 269

Query: 283 KAIDRNSKDYEELKKAGIK 301
              +   K  + +K+AG++
Sbjct: 270 LVAEDQQKIIDGMKEAGVE 288