Pairwise Alignments

Query, 209 a.a., TRAP-type C4-dicarboxylate transport system, small permease component from Variovorax sp. SCN45

Subject, 179 a.a., tripartite ATP-independent periplasmic transporter DctQ from Agrobacterium fabrum C58

 Score = 79.3 bits (194), Expect = 4e-20
 Identities = 51/152 (33%), Positives = 76/152 (50%), Gaps = 2/152 (1%)

Query: 8   VDRFSTWIGKTFAWCALLLTLLISWEVFSRYALNKPHAWVLDAQIMLYGAMFMTAGAYTL 67
           +D  S  +GK   +  L+  L+ +     RYALN      L+ Q  ++  + +   +YTL
Sbjct: 11  IDLVSEALGKVAGYLVLICCLVSAGNAMVRYALNYSSNGWLEIQWYMFAFIVLIGASYTL 70

Query: 68  SKNGHVRGDVLYGFFRPRTQAMVDLTLYIVFFLPGIVALTWAGWIYAGESLAIREQTFSA 127
             N HVR D++YG   PR++  VD+   ++F +P    L W  W     S    E + +A
Sbjct: 71  RMNEHVRVDIIYGAISPRSRLWVDIIGIVLFLIPACFYLAWLSWPMFTLSWHQGEMSSNA 130

Query: 128 EPLPLYPFKYVIPLAGFTLL-LQGIVEIIRCV 158
             L  +P K VI  AGF LL LQG  E+I+ V
Sbjct: 131 GGLIRWPVKLVI-FAGFALLVLQGFSELIKRV 161