Pairwise Alignments

Query, 628 a.a., TRAP-type C4-dicarboxylate transport system, large permease component from Variovorax sp. SCN45

Subject, 468 a.a., Sialic acid TRAP transporter large permease protein SiaM from Xanthobacter sp. DMC5

 Score =  108 bits (270), Expect = 5e-28
 Identities = 62/218 (28%), Positives = 115/218 (52%), Gaps = 8/218 (3%)

Query: 410 FKMLLASFFPLMLLIFSVLGSIVLGLATPTEAAAMGALGGMLLAAA-YRRLNLAVLKESV 468
           F  ++A   P++L+     G + LG  TPTEAA    +  + L    YR + L  L ++ 
Sbjct: 254 FSAVMALMTPVILI-----GGMTLGWFTPTEAAVAAVIWSLFLGLVRYRSMTLKTLAKAT 308

Query: 469 FLTAKTSAMVCWLFVGSAIFSAAFALLGGQALVEEWVLGMNLTKVEFLILSQVIIFLLGW 528
           F T +T+A V ++   ++IF+          ++ + +LG    K  FL L+ ++I  +G 
Sbjct: 309 FDTIETTASVLFIVTAASIFAWLLTASQAAQMLSDAILGFTQNKWVFLALANLLILFVGC 368

Query: 529 PLEWTEIIVIFMPIFIPLLDNFGVDPLFFGLLVALNLQTAFLSPPVAMAAFYLKGVSPPH 588
            ++    I I +PI +P++   G+DP+ FGL++ LNL    L PP+ M  F L  V+   
Sbjct: 369 FIDTIAAITILVPILLPIVLKLGIDPIHFGLIMTLNLMIGLLHPPLGMVLFVLARVA--R 426

Query: 589 VTLNQIFLGMLPFMGIQVLAIVLLYMWPQIGLWLPQLL 626
           +++ +  + +LP++   ++A++ +   P + LWLP  +
Sbjct: 427 LSVERTTMAILPWLVPLMIALLAITYIPGLTLWLPHAM 464



 Score = 73.2 bits (178), Expect = 2e-17
 Identities = 45/185 (24%), Positives = 87/185 (47%), Gaps = 6/185 (3%)

Query: 38  LMLSLVVVAIMLGFPTAFTLMGMGMIFTWLAYDRDWNRTLDLMV-QSAFKTMANDVLIAV 96
           L++   +  ++ G P A  + G  +++  ++         D+++ Q     + +  L+AV
Sbjct: 3   LLIGGFLFLMLCGVPVAIAMAGASLVYILVS-----GTVPDVVIAQRMIAGVESFPLLAV 57

Query: 97  PLFVFMGYLVERANLIESLFKSLHLALARLPGALAVATLVTCTIFATATGIVGAVVTLMG 156
           P F+  G L+  A +   ++      +  + G L    ++   IF+  +G   A    +G
Sbjct: 58  PFFILAGNLMNIAGVTGRIYAFAVALVGWMRGGLGQVNIIGSVIFSGMSGTAIADAAGLG 117

Query: 157 LLALPAMLRAGYSVPLAAGSITAGGCLGILLPPSVLLIVYGATAGVSVVQLYAGAFFPGL 216
            + + AM   GYS   A G   A   LG ++PPS+  ++YG  A VS+  L+ G   PG+
Sbjct: 118 TIEIKAMKDHGYSTEFAVGVTAASATLGPIIPPSLPFVIYGMLANVSIGALFLGGVVPGV 177

Query: 217 MLSSL 221
           +++ L
Sbjct: 178 VMTLL 182