Pairwise Alignments

Query, 277 a.a., Pseudouridine synthase from Variovorax sp. SCN45

Subject, 236 a.a., RNA-binding protein S4 from Pseudomonas simiae WCS417

 Score =  137 bits (346), Expect = 2e-37
 Identities = 92/273 (33%), Positives = 132/273 (48%), Gaps = 42/273 (15%)

Query: 9   SDAVRLNKRMAELKMCSRREADEWIANGWVKVNGRPAEMGVKVTPSDRIEIDKAAKGQQA 68
           +D +RL+KR+ EL  CSRREA+ +I  GWV V+G   +       + ++ +D  AK    
Sbjct: 2   TDPIRLSKRLIELVGCSRREAELFIEGGWVSVDGEVIDEPQFKVTTQKVALDPDAKATVP 61

Query: 69  NQVTILINKPIGYVSGQAEDGHDPAVVLFTPQNRWAEDNARFFFSPQQLRG----LAPCG 124
             VTIL++ P G          D    + +       +  RF   P  L+G    L    
Sbjct: 62  EPVTILLHAPAGV---------DAETAMASISAETLSEEHRFGKRP--LKGHFLRLTASA 110

Query: 125 RLDIDSIGLLVMTQDGRIARQLIGEDSVMEKEYLVRVAYHGLGQPAPTGQLVRMDDDDPV 184
            L   + GLLV TQD +I R+L  + + +E+EY+V V           G +V        
Sbjct: 111 DLQAKASGLLVFTQDWKILRKLTADAAKIEQEYVVEVE----------GDMVAHG----- 155

Query: 185 TTNVQAVFPPAMLARLRHGLSLDGQALKPARVEWQNPEQLRFVLTEGKKRQIRRMCELVG 244
                       L RL HGL+  G+ L   +  WQN  +LRF +   +   I   CE VG
Sbjct: 156 ------------LNRLNHGLTYKGKELPAVKASWQNENRLRFAMKNPQPGVIALFCEAVG 203

Query: 245 LKVVGLKRVRIGKVMLGNLPVGQWRYLAPHEKF 277
           LKV+ ++R+RIG V +G +PVGQWRYL+  EKF
Sbjct: 204 LKVIAIRRIRIGGVSIGKVPVGQWRYLSGKEKF 236