Pairwise Alignments

Query, 369 a.a., Multidrug efflux system, membrane fusion component => MexH of MexHI-OpmD system from Variovorax sp. SCN45

Subject, 435 a.a., multidrug efflux transport system - putative membrane fusion protein from Pseudomonas putida KT2440

 Score =  129 bits (323), Expect = 2e-34
 Identities = 116/416 (27%), Positives = 181/416 (43%), Gaps = 54/416 (12%)

Query: 2   NKQSRVWLGASLATLVLGGAGFGLAMKLRPAHAEGGGM-------------------PPA 42
           ++  R WL   L  L++    + L     PAH E GG+                    P 
Sbjct: 6   SRSLRRWLVGLLILLLVAALAWWLWPAATPAHKEAGGVRGGKGMGMIGGRPGFGGSSDPV 65

Query: 43  KVAVATAQKTQVARFLSGIGTLEANRQVEVPAEVEGRVAKILFTPGGEVRAGQLLVQLND 102
            V V   +      +   +GT+ A   V V + V G + KI F  G  V+AG LL +++ 
Sbjct: 66  PVRVVPVRIGDFPLYYKALGTVTATNTVNVRSRVAGELVKIHFKEGQRVKAGDLLAEIDP 125

Query: 103 AP-------EQGDMERLTAQRANAKALLERTRRLLPQQAATQEQLEQAQAAFDQASGDLR 155
            P        +G + +  AQ  NA+  L R + L  + +  ++ L+ A+A   Q  G ++
Sbjct: 126 RPYRIALQQAEGTLAQNQAQLKNAQVDLARYKGLYAEDSIAKQTLDTAEAQVAQFQGLVK 185

Query: 156 RAQAVLEQKR-------IKAPFDGVLGIRRVNLGQFVRAGD--ALVSLTDSRTLFANLTL 206
             QA +   R       I+AP  G +G+R+++LG  V A D  ALV +T +  +    TL
Sbjct: 186 TNQAQVNDARLNLDFTQIRAPISGRVGLRQLDLGNLVAANDTTALVVITQTEPINVAFTL 245

Query: 207 PETAL-PVLKRNQQ-VALSVDAYPGRVFQ----GRLSTIEPQIGSDTRTVRLQATIDNAD 260
           PET L  VL+R +   +L V+A+     +    G L +I+ QI + T T++ +   +N D
Sbjct: 246 PETELSTVLERYRSGASLPVEAWDRGDSKLQSTGVLGSIDNQIDTTTGTLKFKGRFENKD 305

Query: 261 GALTPGMFVNGKVALPARPDAITVPETAITYSTHGDSVFVVRPAEKGDGFTAQQVFVKAG 320
            AL P  FVN ++        +  P  AI +   G   +VV      +  T     +K G
Sbjct: 306 LALFPNQFVNVRLLADTLKQVVMAPAAAIQFGNDGTFAYVV-----NEQSTVNVRKLKVG 360

Query: 321 ERQDGLVVIENGLAPGDKVVTSGQLRLYTGAAV--------MPTAKDTLALAQEAR 368
                  VI +GL  GD++V  G  RL  G  V        +PT+       QEA+
Sbjct: 361 ASDGENSVILDGLKAGDRLVLEGTDRLREGTKVEVVEDSSQVPTSPGQHLQGQEAK 416