Pairwise Alignments

Query, 477 a.a., Multidrug efflux system, outer membrane factor lipoprotein => OpmD of MexHI-OpmD system from Variovorax sp. SCN45

Subject, 472 a.a., putative efflux transporter from Pseudomonas putida KT2440

 Score =  210 bits (535), Expect = 7e-59
 Identities = 153/465 (32%), Positives = 228/465 (49%), Gaps = 16/465 (3%)

Query: 16  LVLAGCA-VGPKYTAPSDAPVA---ISAPERS---LFAGDAVQRDWWRQLDDPQLDALID 68
           L L  C  VGP Y  P DA V    ++ P R          V  DWW+   D +L+ L+ 
Sbjct: 11  LSLGACMMVGPDYEVPGDAAVQRNDLNGPLRQDADSVVSAPVPEDWWQLYQDQRLNELVR 70

Query: 69  RALAENHEIRIAQARLLEARATQTEAELDRLPVVTASASKTRGIAQGNDGLQPDVRSLSQ 128
           +AL+ N E+R+A A + +ARA    AE              R    G   LQP+   ++ 
Sbjct: 71  QALSANTELRVAAANIAKARAQVEVAESQGGFNGGVKLGAQRLQESGEAFLQPEKVPVAN 130

Query: 129 SSRAGFDASWEIDLFGRLKRLDEAATARAEASAADLEQVRIVAVAELARNYYEMRGAEQR 188
              A   AS++ DL+G  KR  EAA A A+A  A  +  RI  VA++ + Y ++  A + 
Sbjct: 131 IGEAIISASYQFDLWGTFKRGTEAAKANADAVQAAADTARITLVADVVKAYTQVCSANEE 190

Query: 189 IAVTRRTLDSLRQSLRVTEAQVRTGRGLEGDLASAQANLATTESQLPALETARRQSAYRV 248
             + R +LD   QS+++ +     GRG E  +  +Q    +  ++LP  +  R    Y +
Sbjct: 191 YHIARESLDLQEQSVKLNQRLRDAGRGDETQVTRSQTQFKSLRAELPRFKAERETGMYTL 250

Query: 249 AVLAGLRPAELEPMLRPQ--PLRVLDKRLPIGDMADLLRRRPDVLRAERGLAASTADVGA 306
           A L   +P +  P        L  L++ +P+GD A LL+RRPDV +AER LAA+TA +G 
Sbjct: 251 AALLA-KPVDQLPAGTADCAELPHLNQLVPVGDGAALLKRRPDVRQAERQLAAATAYIGV 309

Query: 307 VTAELYPRFDIGGFLGFIALRGSDLGSSSSRAFSVTPGVSWPALRLGSVKARVRGAEARA 366
            T  LYP   IG  +G I +   +LG  S+  +   P +SW ++     +AR+R AEA  
Sbjct: 310 ATGALYPDISIGAQVGTIGIL-ENLGEPSTNRWGFGPQISW-SIPTNGTRARIRMAEAST 367

Query: 367 QGDRALYEQTVLRAIEDVEGALTGYGQNQLRLQRLVEASARSGRAAELAEVRYREGAAPY 426
           Q   A ++  VL AI + +  L  Y     R   L EA   +  AA+     Y+ G   +
Sbjct: 368 QAALAHFDGVVLNAIRETQTRLAQYSALLDRRDALAEAEKSAKEAADQTHRYYQAGRESF 427

Query: 427 LSVLDAQRTL--LRAQDAVAEAETASYTSLVALYKALGGGWQAPA 469
           L+ L A RT   +RAQ A A ++ A     +A++ ALGGGW+  A
Sbjct: 428 LADLQATRTYTDMRAQLAAANSQVAQ--GQIAVFLALGGGWKGTA 470