Pairwise Alignments

Query, 397 a.a., ABC transporter, substrate-binding protein (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 400 a.a., Branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein from Pseudomonas putida KT2440

 Score = 72.0 bits (175), Expect = 3e-17
 Identities = 94/377 (24%), Positives = 148/377 (39%), Gaps = 24/377 (6%)

Query: 3   MTKRTILST-LLLASFGVLGTTAAQA-ADEPLRIGLIATYSGPYADYGRQFDAGIALYLK 60
           M +RT+L   L L + G L   A +A AD+PL    + + SG +A YG+  D G  L + 
Sbjct: 1   MQRRTLLKAGLALGALGSLPLGAHRAFADQPLTFYGLKSMSGAFASYGKYADMGSRLAIA 60

Query: 61  EHGGKVGGRTVEIIKKDTAGPAPDAAKRIAQELIVRDKVSVLTGLDFSPNAYAV------ 114
           EH  ++ G  ++    DT G A  A +++ QE I +D      G   S +A AV      
Sbjct: 61  EH-PQLLGHPLKYKVIDTEGNAGKAVRKV-QEAIGQDGARFFQGCTLSSSALAVSKEIHK 118

Query: 115 --GAIATQAKIPTIV-MNAASSAITTSSPYVARLSFTVQQVTDPMARYMLKEGIKDAYTV 171
             G   T      I   +  +S    S P        +++   PM+R + +   K  YT+
Sbjct: 119 AGGVFMTPVGADEITGKDCNASTFRWSVPTYG----AIRETLVPMSRQLPQ--AKRWYTI 172

Query: 172 VADYASGVDAETAFKKTFTAGGGKVSGEVRTPMNNPDFSAYVQRIKDAKPQAVFFFFPSG 231
              Y  G       +K F   G +  G     +   +FS Y+     AKP  V      G
Sbjct: 173 TPQYVFGDALLDNARKVFAELGVEHIGNSYHSLQEQEFSGYLTNAIAAKPD-VLVLLNFG 231

Query: 232 VMPPAFLKVWKERGMEQAGIKLFATGEATDDSYLDATGDVALGLVTSHHYSFAHPSPKNQ 291
                 L+     G++   +K+     A  D + +   DV  G+     Y     +P N+
Sbjct: 232 SQASNALRQAVNFGIKDR-MKVLMVWSAGLDQFQELGSDVLEGVYLGAQYWHQVDTPLNK 290

Query: 292 KFVKDFAADNGAKLRPSYFAVTAYDAMAAIDLALAKTKGDTGGDKFMDALKGLSFESPRG 351
             V   A      + P+Y     Y     +  A+ K  G   G     AL+G+ F+ P G
Sbjct: 291 LLVA--ATRKAYGINPNYPLAADYIGTKVMLEAIVKA-GSLDGAAVSAALQGMRFQGPTG 347

Query: 352 PIEIDPVTRDIVQTVYI 368
              I P    +++  Y+
Sbjct: 348 EELIRPGDHQVLKDYYL 364