Pairwise Alignments

Query, 384 a.a., Possible regulatory protein similar to urea ABC transporter, substrate binding protein from Variovorax sp. SCN45

Subject, 378 a.a., branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) from Pseudomonas putida KT2440

 Score = 64.3 bits (155), Expect = 5e-15
 Identities = 61/248 (24%), Positives = 102/248 (41%), Gaps = 34/248 (13%)

Query: 7   IRVGILYSETGVTSTIGLSQLQGALLAIEEINAAGGVEGREIVAVRYDPQSNPARYAQLA 66
           +++G+    TG  +  G   ++GA  A ++INAAGGV G +IV V+ D    P +   +A
Sbjct: 29  VKIGVAGPMTGANAAFGEQYMKGAQAAADKINAAGGVNGEKIVLVKGDDACEPKQAVAVA 88

Query: 67  EKLIVQDRVNVIFGCYMSSSRKAVIPVIEKWNKLLFYPTLYEGFEYSGNVIYTGAAPNQN 126
            +L+ QD+V  + G + SS+    IP  E +++             +G +  T  + N  
Sbjct: 89  NRLVDQDKVIGVVGHFCSSN---TIPASEVYDE-------------AGVIAITPGSTNPQ 132

Query: 127 SVQ---LAEFMTTNFGARVYLIGSDYIYPYESNRIM-----------GELVMQRPGSEKL 172
             +    A F       +  ++  DYI      + +           G     +   EK 
Sbjct: 133 VTERGLSAMFRMCGRDDQQGIVAGDYIVDVLKGKKVAVLHDKDTYGQGLADATKAQLEKR 192

Query: 173 GER---YVALDAGERDYRAIMDDIRDKRPDFIFSTVVGDSTASLYRAYAEAGF-DPKTMP 228
           G +   Y  L  GE+D+ A++  IR    D ++   +      L R   E G  D K M 
Sbjct: 193 GVKPVLYEGLTRGEKDFSAVVTKIRSTGADVVYFGGLHPEAGPLVRQLREQGLKDVKFMS 252

Query: 229 IASLTTSE 236
              + T E
Sbjct: 253 DDGIVTDE 260