Pairwise Alignments

Query, 641 a.a., Transcriptional activator of acetoin dehydrogenase operon AcoR from Variovorax sp. SCN45

Subject, 636 a.a., Sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  300 bits (769), Expect = 1e-85
 Identities = 228/616 (37%), Positives = 318/616 (51%), Gaps = 30/616 (4%)

Query: 29  VHKSWARCVRDHGLD--PSKPTPARILPAQEVRAHQQQLEHFLRAARAGMEDIYRRVADL 86
           +  SW R +  HGLD    +     +    ++R   ++    + A    ++ +  R    
Sbjct: 38  IDASWRRSL-GHGLDCLQGEQVGLGLEQGHDLRLLLERNRLLIDAVTPELDYLVARQGKA 96

Query: 87  GYMVLLTDAEGITVDYIGNPAWDDQLRKAGLYLGADWNEAHAGTCGVGTCLVERQPMTCH 146
           G +V+L DA+   +   G      +     L+ G+ W+E+  GT  +GT +VE +P   +
Sbjct: 97  G-IVILGDAQANVLAIEGQKHVLQREGLRDLHPGSCWSESLRGTNAIGTAVVEGRPTLIN 155

Query: 147 QTEHFDATHIALTCTTAPLFDHSGKLTAILDVSALRSPEAKESQHLVRHLVSMYARMIED 206
             EH+       +CT+ PL D  G++  +LD++  R     + Q  +  L+ + A  IE 
Sbjct: 156 CGEHYLDRLSPFSCTSVPLRDPRGEVIGVLDIT--REGVMAQPQDSLSTLM-LAAGNIES 212

Query: 207 ADFLRNFRGHWILRLGSAFGLVDVAGEVMLAFDDGGTLAGANGGARQAFA--GHALSGAV 264
             F        +L   S    ++ A   +LA    G +  AN GA Q      H L G  
Sbjct: 213 RLFGLCHPDQLVLAFHSRPQYLNSAWHGLLALSLDGEVLAANDGACQLLQVPRHELIGRR 272

Query: 265 S-ELLHMPMDA-IWRIGNGGAISPLMPFAHTVLLPGGGEYHASLIAPRSRRAQAPATAAP 322
           S +LL     A I R+  GG  S        V    G  Y  +L  PR  R   P+T  P
Sbjct: 273 STDLLGERSPAFIARLWQGGVSS--------VQTAKGEFYFRALQLPRHGRV-TPST--P 321

Query: 323 SARP--SDRLPPLERIAGDDPAMQKLLAQARRLVDRGIHVLVEGETGSGKEVLARALHSA 380
           S++P  S + P L+ +AG D  + + L  AR+ +  G+ VL+ GETG+GKEV+ARALH A
Sbjct: 322 SSKPALSKQSPALDALAGGDQRLARNLRMARQGLGNGLPVLLLGETGTGKEVVARALHQA 381

Query: 381 SSRAAMPFVAVNCAAIPDSLIESELFGYTPGSFTGGRAKGMKGLIAQADRGTLFLDEIGD 440
           S RA  PFVAVNCAAIP+ LIESELFGY  G+FTG R  GM G + QA  GTLFLDEIGD
Sbjct: 382 SPRADKPFVAVNCAAIPEGLIESELFGYREGAFTGSRRGGMVGRLMQAHGGTLFLDEIGD 441

Query: 441 MPMALQTRLLRVLSEGEVLPLGAESPQRVDIAVVAATHRHLPGLVASGRFREDLYYRLCG 500
           MP+ALQ RLLRVL E  V PLGA   Q +D+A++ ATHR L  LV    FREDL+YR+ G
Sbjct: 442 MPLALQARLLRVLQERRVAPLGAGDEQDIDVALICATHRDLKRLVQEQHFREDLFYRVNG 501

Query: 501 AVLKLPPLRARGDMRYLIEGMFNEEAAAMPSPARLSEEAMQRLLAHDWPGNLRELRNALR 560
             L+LP LR R D+  +I+G+ ++  A       L       L   DWPGN+R+L   +R
Sbjct: 502 VSLRLPALRERDDLAAIIQGLLDKADA---RGVTLDPALTALLEGFDWPGNIRQLEMVVR 558

Query: 561 LALALC-TGASVSAQDLQLQARADTVCDTEPDEDVA--AEARRLLDALKRHRWRVAHAAD 617
            ALA+   G  V   D       D +  +         +E  ++  AL RH+  V+ AA 
Sbjct: 559 TALAMREDGEQVLTLDHLTDCLLDELASSAAPSGSLKDSELEQIRGALARHQGNVSAAAA 618

Query: 618 ELGMSRATAYRHMKRL 633
            LG+SRAT YR +K+L
Sbjct: 619 ALGISRATLYRKLKQL 634