Pairwise Alignments

Query, 641 a.a., Transcriptional activator of acetoin dehydrogenase operon AcoR from Variovorax sp. SCN45

Subject, 671 a.a., sigma-54 dependent transcriptional regulator from Pseudomonas putida KT2440

 Score =  433 bits (1114), Expect = e-125
 Identities = 263/675 (38%), Positives = 372/675 (55%), Gaps = 59/675 (8%)

Query: 6   SRHIDNVYSIATGAALADPTQSLVHKSWARCVRDHGLDPSKPTPARILPAQEVRAHQQQL 65
           +RH   V+S+A G A    +   + +SW RC+ D+ LDP+      +L    +   +++L
Sbjct: 7   TRHARQVHSVAHGGAGEGGSDPSIARSWLRCLEDYHLDPAVIEAPVVLEHGRLLESRERL 66

Query: 66  EHFLRAARAGMEDIYRRVADLGYMVLLTDAEGITVDYIGNPAWDDQLRKAGLYLGADWNE 125
              L+ A   M  ++++++  G+ VLLTDA G+ ++ +  PA      +AGL+LGADW+E
Sbjct: 67  HQVLQIADHEMNSLHQQLSGAGHAVLLTDARGVILNCVSAPAERRSFERAGLWLGADWSE 126

Query: 126 AHAGTCGVGTCLVERQPMTCHQTEHFDATHIALTCTTAPLFDHSGKLTAILDVSALRSPE 185
           A  GT G+GTCLVERQ +T HQ EHF   H  LTC+ +P+FD  G L A+LDVS+ R   
Sbjct: 127 AREGTNGIGTCLVERQALTIHQNEHFRGRHTGLTCSASPVFDPHGDLLAVLDVSSARPDV 186

Query: 186 AKESQHLVRHLVSMYARMIEDADFLRNFRGHWILRLGSAFGLVDVAGEVMLAFDDGGTLA 245
           +++SQ     LV++ A+MIE   FLR+F   W+LR       V +  E +LAFD  G + 
Sbjct: 187 SRQSQFHTMALVNLSAKMIESCYFLRHFEQQWLLRFHLQAESVGLFSEGLLAFDGDGRIC 246

Query: 246 GANGGARQAFAGHALSGAVSELLHMPMDAIWRIGNGGAISPLMPFAHTV---LLPGGGEY 302
            AN  A      + L      +L  P++  +   +    S   P    V       G + 
Sbjct: 247 AANQSAL-----NLLGTVRGGVLGKPLECFFACSHDEMFSRATPGGSAVWPLRTLDGRQV 301

Query: 303 HASLIAPRSRRAQAPATAAPSA--RPSDRLPPLERIAGDDPAMQKLLAQARRLVDRGIHV 360
            ASL      +A+AP  + P+A  RP+  + PL  +   DPA+Q    ++ R+ +R + +
Sbjct: 302 FASL----RGQARAPVWSVPAAQPRPAGEVEPLVCLL--DPALQNDFRRSVRVFERDVPL 355

Query: 361 LVEGETGSGKEVLARALHSASSRAAMPFVAVNCAAIPDSLIESELFGYTPGSFTGGRAKG 420
           L+ GETG GKE  A+A+H AS R   PFVA+NCA+IP+SLIESELFGY  GSFTG R +G
Sbjct: 356 LLRGETGCGKEAFAQAVHQASERRGKPFVAINCASIPESLIESELFGYRGGSFTGARKEG 415

Query: 421 MKGLIAQADRGTLFLDEIGDMPMALQTRLLRVLSEGEVLPLGAESPQRVDIAVVAATHRH 480
           M+G + QAD GTL LDEIGDMP+ALQTRLLRVL E +V+P+G E PQ VD+ +V+ATHR 
Sbjct: 416 MRGKLLQADGGTLLLDEIGDMPLALQTRLLRVLEERQVVPIGGE-PQAVDVRIVSATHRD 474

Query: 481 LPGLVASGRFREDLYYRLCGAVLKLPPLRARGDMRYLIEGMFNEEAAAMPSPARLSEEAM 540
           L   V  G FREDLYYRL G  + LP +R R D   L++ +  +E         +   A 
Sbjct: 475 LLERVEQGSFREDLYYRLNGLEVALPAVRERSDKAQLLDFLLRQETQG--QWIDIEPRAR 532

Query: 541 QRLLAHDWPGNLRELRNALRLALALCTGASVSAQDLQLQARAD----------TVCDTEP 590
           Q LLA +WPGN+R++RN LR  +ALC  A ++  DL    R             + D E 
Sbjct: 533 QALLAFNWPGNVRQMRNVLRTLVALCEDARITFADLPAVIRTSPPLAGVGEPAKMSDQEM 592

Query: 591 D-EDVA-----------------------------AEARRLLDALKRHRWRVAHAADELG 620
           + E VA                             AE + L + L+   W +   A+ LG
Sbjct: 593 EGEGVALVRGQARSHRSGGAAEIEGESAGTEVLLDAERQALKEVLEAKHWHLTRVAEHLG 652

Query: 621 MSRATAYRHMKRLGI 635
           +SR T YR +++ GI
Sbjct: 653 ISRNTLYRKLRKHGI 667