Pairwise Alignments

Query, 609 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score =  193 bits (490), Expect = 1e-53
 Identities = 105/296 (35%), Positives = 173/296 (58%), Gaps = 15/296 (5%)

Query: 6   FFDYTVNGLIIGNIYALLAVGLALIFGVSHLINFAHGSVYTVGAYIGWASITYL------ 59
           F    VNGL +G++Y L+A+G  +++G+  +INFAHG VY + AY+   S+  L      
Sbjct: 5   FLQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVE 64

Query: 60  HTPLPV--TIALVVLGSGALGMLIERVGLRPLQGAARIAPLLATIGISFVLDILVQLVFS 117
             PL +  T+   ++ +G  G  IER+  +PL+ + R+APL++ IGIS +L    Q+   
Sbjct: 65  SFPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQG 124

Query: 118 PDPRSLPTQLPD-WRLRIGTG----TIGALDILIAGIGIASAAVLFGFLRFTKLGWAVRA 172
              + +PT L    R+ +G+G    T   + IL+A        +L   +++TKLG   RA
Sbjct: 125 ARQQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAF--VGMGLLTYVIKYTKLGRMCRA 182

Query: 173 TAQDRDAAQQMGVDVDRVNQTVFAIAAALGGLSGLLVGMYYNNISPAMSFQATLKGVVAT 232
           T QDR  A  +G++ DRV   VF I A +  L+G+L+ M Y        F   +K   A 
Sbjct: 183 TQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAFTAA 242

Query: 233 VVGGVGNVPGAIVGSLLLGLIESYGVAILGTPYRNLFAFALLLVILVWKPNGLFGR 288
           V+GG+G++PGA++G ++LG+ ES    ++ + Y+++F+F+LL++IL+++P GL GR
Sbjct: 243 VLGGIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLGR 298



 Score = 91.7 bits (226), Expect = 4e-23
 Identities = 76/292 (26%), Positives = 134/292 (45%), Gaps = 21/292 (7%)

Query: 334 LLQTLTNAWLYGALALSLTLVAGTIGQISLGHAGLLAIGAYASSLLVLDLH--------- 384
           L+  LT   +YG +A+  T+V G IG I+  H  +  I AY +++ +  L          
Sbjct: 9   LVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYFGVESFPL 68

Query: 385 LPVGTGIVLAGILTSLIGTALIFPAFRLRGHYVSIATLGIGEIVALTILNWESLTHGPIG 444
           L +GT ++   ++T + G  +   A++   +   +A L     ++L + N+  ++ G   
Sbjct: 69  LMLGT-LLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQG-AR 126

Query: 445 VSGIPPLSLFGRDASSNEAIYWASF-------GAMVLLALLQWRLLRSHLGRTFRAVRED 497
             G+P L                ++        A V + LL + +  + LGR  RA ++D
Sbjct: 127 QQGVPTLLEGAMRVEVGSGFVQLTYTKIFILVAAFVGMGLLTYVIKYTKLGRMCRATQQD 186

Query: 498 EVAARAYGVSPDRYKALAFGFGGFAAGVSGAFTAHMYSYINHETFGSQISILALTMVILG 557
              A   G++ DR  +  F  G   A ++G      Y   +    G  I I A T  +LG
Sbjct: 187 RKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYA-GFIIGIKAFTAAVLG 245

Query: 558 GLGNISGALLGAVALVSLPELFR--VTAEYRMLIYGVALLLLIRFRPQGLLG 607
           G+G++ GA+LG + L     LF   + ++Y+ +     L++++ FRPQGLLG
Sbjct: 246 GIGSLPGAMLGGIILGISESLFSGLINSDYKDVFSFSLLVMILIFRPQGLLG 297