Pairwise Alignments

Query, 609 a.a., ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) from Variovorax sp. SCN45

Subject, 418 a.a., branched chain amino acid transporter - permease subunit from Pseudomonas putida KT2440

 Score =  182 bits (461), Expect = 3e-50
 Identities = 123/348 (35%), Positives = 180/348 (51%), Gaps = 29/348 (8%)

Query: 283 NGLFGRK--RALPPEPLTGTFIAPSKPWRVPPRLLLALFAAAAALPLFDPSPYLLQTLTN 340
           + + GR+  R L P P    ++   K  R    +++ L   A   P F  S   +   T 
Sbjct: 65  SSVMGRRSDRKLIP-PAVSNYLTLPKTQRY---VIIGLIVVALVWPFFG-SRGAVDIATL 119

Query: 341 AWLYGALALSLTLVAGTIGQISLGHAGLLAIGAYASSLLVLDLHLPVGTGIVLAGILTSL 400
             +Y  L L L +V G  G + LG+ G  A+GAY+ ++L   L       + +AG++ + 
Sbjct: 120 ILIYVLLGLGLNIVVGLAGLLDLGYVGFYAVGAYSYAMLSHYLGWSFWVCLPIAGLMAAT 179

Query: 401 IGTALIFPAFRLRGHYVSIATLGIGEIVALTILNWESLTHGPIGVSGIPPLSLFG----R 456
            G  L FP  RLRG Y++I TLG GEI+ L + N    T GP G+S IP    FG    R
Sbjct: 180 FGFLLGFPVLRLRGDYLAIVTLGFGEIIRLFLRNLTDWTGGPNGISNIPKPEFFGLTFER 239

Query: 457 DASSNEAIYWASFGAM--------------VLLALLQW----RLLRSHLGRTFRAVREDE 498
            A+     +   FG                +LLALL      RLLR  +GR + A+REDE
Sbjct: 240 RAAEGMQTFHEFFGLQYNSINKVIFLYLVALLLALLALFVINRLLRMPIGRAWEALREDE 299

Query: 499 VAARAYGVSPDRYKALAFGFGGFAAGVSGAFTAHMYSYINHETFGSQISILALTMVILGG 558
           +A RA G++P   K  AF  G   AG +G+F A     +  E+F    S + L +V+LGG
Sbjct: 300 IACRALGLNPTVIKLSAFTLGACFAGFAGSFFAARQGLVTPESFTFIESAIILAIVVLGG 359

Query: 559 LGNISGALLGAVALVSLPELFRVTAEYRMLIYGVALLLLIRFRPQGLL 606
           +G+  G +L A+ ++ LPEL R  +EYRML++G  ++L++ +RPQGLL
Sbjct: 360 MGSQLGVILAAIVMILLPELMREFSEYRMLMFGALMVLMMIWRPQGLL 407



 Score = 55.1 bits (131), Expect = 6e-12
 Identities = 63/297 (21%), Positives = 129/297 (43%), Gaps = 32/297 (10%)

Query: 19  IYALLAVGLALIFGVSHLINFAHGSVYTVGAYIGWASITYLHTPLPVTIALVVLGSGALG 78
           IY LL +GL ++ G++ L++  +   Y VGAY       YL     V + +  L +   G
Sbjct: 122 IYVLLGLGLNIVVGLAGLLDLGYVGFYAVGAYSYAMLSHYLGWSFWVCLPIAGLMAATFG 181

Query: 79  MLIERVGLRPLQGAARIAPLLATIGISFVLDILVQLV--FSPDPRSLPTQLPD------- 129
            L+    LR L+G       + T+G   ++ + ++ +  ++  P  + + +P        
Sbjct: 182 FLLGFPVLR-LRGDYLA---IVTLGFGEIIRLFLRNLTDWTGGPNGI-SNIPKPEFFGLT 236

Query: 130 WRLRIGTG-------------TIGALDILIAGIGIASAAVLFGFLRFTKL--GWAVRATA 174
           +  R   G             +I  +  L     + +   LF   R  ++  G A  A  
Sbjct: 237 FERRAAEGMQTFHEFFGLQYNSINKVIFLYLVALLLALLALFVINRLLRMPIGRAWEALR 296

Query: 175 QDRDAAQQMGVDVDRVNQTVFAIAAALGGLSGLLVGMYYNNISP-AMSFQATLKGVVATV 233
           +D  A + +G++   +  + F + A   G +G         ++P + +F  +   +   V
Sbjct: 297 EDEIACRALGLNPTVIKLSAFTLGACFAGFAGSFFAARQGLVTPESFTFIESAIILAIVV 356

Query: 234 VGGVGNVPGAIVGSLLLGLIESYGVAILGTPYRNLFAFALLLVILVWKPNGLFGRKR 290
           +GG+G+  G I+ ++++ L+         + YR L   AL++++++W+P GL   +R
Sbjct: 357 LGGMGSQLGVILAAIVMILLPELMREF--SEYRMLMFGALMVLMMIWRPQGLLPMQR 411