Pairwise Alignments

Query, 393 a.a., Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 375 a.a., ABC transporter for branched-chain amino acids, substrate-binding component (from data) from Pseudomonas simiae WCS417

 Score =  118 bits (296), Expect = 2e-31
 Identities = 98/356 (27%), Positives = 165/356 (46%), Gaps = 16/356 (4%)

Query: 11  RHVAVLSAALLATPLAALAAAATGEPVWFGVSGPLTGQNAQYGAQWKAGFDLALEHINAQ 70
           + ++ L AA++   +A  + AA  + +  G++GP TG   QYG     G   A+  INA+
Sbjct: 6   KQISKLFAAMVLAGVAGHSFAA--DTIKIGIAGPKTGPVTQYGDMQFMGAKQAIADINAK 63

Query: 71  GGIQGRPLAYNFEDSQSDPRQSVAIAQKLVNDKRVLIELGDFSSPASMAASPIYQRAGLV 130
           GG+ G+ L     D   DP+Q+VA+A K+VND  V   +G   S ++  AS IY+  G++
Sbjct: 64  GGVDGKMLEAKEYDDACDPKQAVAVANKVVND-GVKFVVGHLCSSSTQPASDIYEDEGVI 122

Query: 131 QLGFTNSHPDFTKGGDYIWSPSISQADAQ-PLLAELAVKTLGFKRIAVLYLNTDWGRTSK 189
            +    + P+ T  G  +   +I    AQ P         +  K +AVL+    +G    
Sbjct: 123 MITPAATSPEITARGYKLIFRTIGLDSAQGPAAGNYIADHVKPKIVAVLHDKQQYGEGIA 182

Query: 190 DVLVKAAQERGAQVAIAEGYQPDEKDFRSTLVRVRDANPDGLVLISYYPDGALIAGQVRS 249
             + +  +++G +VA+ EG    +KDF S + +++ AN D +    Y+P+  LI  Q + 
Sbjct: 183 TAVKQTLEKKGTKVAVFEGLNAGDKDFSSIIQKLKQANVDFVYYGGYHPELGLILRQAKE 242

Query: 250 VGLRQPIAAVGSVYSPKFIELG-GASVNGIFTNTAFYPDEP--RAEVQDFVKSFRAKYNK 306
            GL         V +    ++  GAS   + T    +  +P  +A V++F     AK  +
Sbjct: 243 KGLNAKFMGPEGVGNDSISQIAQGASEGLLVTLPKSFDTDPANKAIVEEF-----AKNKQ 297

Query: 307 EPDA-FNAYAYDAVVYAAAALRQAGANADRKAVRDAFYKIKDVPSVIFGKASFDAQ 361
           +P   F   AY A+   A  ++ A +    K            P+   G  SFDA+
Sbjct: 298 DPTGPFVFPAYSAIEVIAGGIKAAKSEDTAKVAEAIHAGTFKTPT---GDLSFDAK 350