Pairwise Alignments

Query, 393 a.a., Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 378 a.a., branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein (braC-like) from Pseudomonas putida KT2440

 Score =  135 bits (341), Expect = 1e-36
 Identities = 102/373 (27%), Positives = 181/373 (48%), Gaps = 15/373 (4%)

Query: 21  LATPLAALAAAATGEPVWFGVSGPLTGQNAQYGAQWKAGFDLALEHINAQGGIQGRPLAY 80
           LA   A   ++     V  GV+GP+TG NA +G Q+  G   A + INA GG+ G  +  
Sbjct: 13  LAVATALGVSSYVQADVKIGVAGPMTGANAAFGEQYMKGAQAAADKINAAGGVNGEKIVL 72

Query: 81  NFEDSQSDPRQSVAIAQKLVNDKRVLIELGDFSSPASMAASPIYQRAGLVQLGFTNSHPD 140
              D   +P+Q+VA+A +LV+  +V+  +G F S  ++ AS +Y  AG++ +   +++P 
Sbjct: 73  VKGDDACEPKQAVAVANRLVDQDKVIGVVGHFCSSNTIPASEVYDEAGVIAITPGSTNPQ 132

Query: 141 FTKGGDYIWSPSISQADAQPLLA-ELAVKTLGFKRIAVLYLNTDWGRTSKDVLVKAAQER 199
            T+ G         + D Q ++A +  V  L  K++AVL+    +G+   D      ++R
Sbjct: 133 VTERGLSAMFRMCGRDDQQGIVAGDYIVDVLKGKKVAVLHDKDTYGQGLADATKAQLEKR 192

Query: 200 GAQVAIAEGYQPDEKDFRSTLVRVRDANPDGLVLISYYPDGALIAGQVRSVGLRQP--IA 257
           G +  + EG    EKDF + + ++R    D +     +P+   +  Q+R  GL+    ++
Sbjct: 193 GVKPVLYEGLTRGEKDFSAVVTKIRSTGADVVYFGGLHPEAGPLVRQLREQGLKDVKFMS 252

Query: 258 AVGSVYSPKFIELGGAS-VNGIFTNTAFYP---DEPRAEVQDFVKSFRAKYNKEPDAFNA 313
             G V        GGA  V+G++      P    + +A V++F K+       EP+ +  
Sbjct: 253 DDGIVTDELVSTAGGAQYVDGVYMTFGADPRLLPDSKAVVEEFRKA-----GTEPEGYTL 307

Query: 314 YAYDAVVYAAAALRQAGANADRKAVRDAFYKIKDVPSVIFGKASFDAQTRRIIGVKSVNL 373
           YAY ++   AAA   A +N    A +  + K   V +V+ G+  +D++    +    V  
Sbjct: 308 YAYASLQALAAAFNGAKSNKGEDAAK--WLKANPVQTVM-GEKKWDSKGDLTVSDYVVYQ 364

Query: 374 VVKDGKWAQLDEK 386
             K GK+ QL+++
Sbjct: 365 WDKTGKYHQLEKQ 377