Pairwise Alignments

Query, 393 a.a., Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 371 a.a., branched-chain amino acids ABC transporter - periplasmic leucine binding subunit from Pseudomonas putida KT2440

 Score =  119 bits (297), Expect = 2e-31
 Identities = 92/336 (27%), Positives = 160/336 (47%), Gaps = 12/336 (3%)

Query: 13  VAVLSAALLATPLAALAAAATGEPVWFGVSGPLTGQNAQYGAQWKAGFDLALEHINAQGG 72
           ++ L AA++   +A+ + AA  + +  G++GP TG   QYG     G   A++ INA GG
Sbjct: 4   ISKLFAAMVLAGVASHSFAA--DTIKIGIAGPKTGPVTQYGDMQFIGAKQAIKDINAAGG 61

Query: 73  IQGRPLAYNFEDSQSDPRQSVAIAQKLVNDKRVLIELGDFSSPASMAASPIYQRAGLVQL 132
           + G+ L     D   DP+Q+VA+A K+VND  V   +G   S ++  AS IY+  G++ +
Sbjct: 62  VDGKMLEAKEYDDACDPKQAVAVANKVVND-GVKFVVGHLCSSSTQPASDIYEDEGVIMI 120

Query: 133 GFTNSHPDFTKGGDYIWSPSISQADAQ-PLLAELAVKTLGFKRIAVLYLNTDWGRTSKDV 191
               + P+ T  G  +   +I    AQ P         +  K +AVL+    +G      
Sbjct: 121 TPAATSPEITARGYKLIFRTIGLDSAQGPAAGNYIADHVKPKVVAVLHDKQQYGEGIATA 180

Query: 192 LVKAAQERGAQVAIAEGYQPDEKDFRSTLVRVRDANPDGLVLISYYPDGALIAGQVRSVG 251
           + +  + +G +VA+ EG    +KDF S + +++  N D +    Y+P+  LI  Q +  G
Sbjct: 181 VKQTLESKGTKVAVFEGLNAGDKDFSSIIQKLKQNNVDFVYYGGYHPELGLILRQAQEKG 240

Query: 252 LRQPIAAVGSVYSPKFIELGGASVNGIFTN--TAFYPDEPRAEVQDFVKSFRAKYNKEPD 309
           L+        V +    ++   +  G+      +F  D    ++ D +K+      K+P 
Sbjct: 241 LKAKFMGPEGVGNDSISQIAQNASEGLLVTLPKSFDADPANKKIVDAIKA----DGKDPS 296

Query: 310 A-FNAYAYDAVVYAAAALRQAGANADRKAVRDAFYK 344
             F   AY AV   A  +++AG++ D   V +A +K
Sbjct: 297 GPFVFPAYSAVELIAQGIKKAGSD-DTDKVAEAIHK 331