Pairwise Alignments

Query, 393 a.a., Branched-chain amino acid ABC transporter, substrate-binding protein LivJ (TC 3.A.1.4.1) from Variovorax sp. SCN45

Subject, 364 a.a., ABC-type branched-chain amino acid transport systems, periplasmic component from Enterobacter asburiae PDN3

 Score =  116 bits (290), Expect = 1e-30
 Identities = 99/350 (28%), Positives = 158/350 (45%), Gaps = 20/350 (5%)

Query: 19  ALLATPLAALAAAATGEPVWFGVSGPLTGQNAQYGAQWKAGFDLALEHINAQGGIQGRPL 78
           ALLA  +A   +      +   V G ++G  AQYG Q   G + A+  INA+GGI+G  L
Sbjct: 5   ALLAGCIALAFSTMAQADIKVAVVGAMSGPVAQYGDQEFTGAEQAVADINAKGGIKGEKL 64

Query: 79  AYNFEDSQSDPRQSVAIAQKLVNDKRVLIELGDFSSPASMAASPIYQRAGLVQLGFTNSH 138
                D   DP+Q+VA+A K+VND  +   +G   S ++  AS IY+  G++ +    + 
Sbjct: 65  QIVKYDDACDPKQAVAVANKVVND-GIKYVIGHLCSSSTQPASDIYEDEGILMITPAATA 123

Query: 139 PDFTKGGDYIWSPSIS-QADAQPLLAELAVKTLGFKRIAVLYLNTDWG----RTSKDVLV 193
           P+ T  G  +   +    +D  P  A+  V+ +  KRIA+++    +G    R+ +D L 
Sbjct: 124 PELTARGYKLTLRTTGLDSDQGPTAAKYIVEKVKPKRIAIVHDKQQYGEGLARSVQDNLK 183

Query: 194 KAAQERGAQVAIAEGYQPDEKDFRSTLVRVRDANPDGLVLISYYPDGALIAGQVRSVGLR 253
           KA     A V   +G    EKDF + + R++  N D +    Y+P+   I  Q R+ GL+
Sbjct: 184 KA----NADVVFFDGITAGEKDFSTLVARLKKENIDFVYYGGYHPEMGQILRQARAAGLK 239

Query: 254 QPIAAVGSVYSPKFIELGGASVNGIF-TNTAFYPDEP-RAEVQDFVKSFRAKYNKEPDAF 311
                   V +     + G S  G+  T    Y   P    + D +K+      K+ D  
Sbjct: 240 TQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYDQVPANKPIVDAIKA------KKQDPS 293

Query: 312 NAYAYDAVVYAAAALRQAGANADRKAVRDAFYKIKDVPSVIFGKASFDAQ 361
            A+ +    YAA    QAG N        A +   +    + G  S+DA+
Sbjct: 294 GAFVW--TTYAALQSLQAGLNQSADPAEIATWLKANTVETVMGPLSWDAK 341