Pairwise Alignments
Query, 533 a.a., Nucleoside ABC transporter, ATP-binding protein from Variovorax sp. SCN45
Subject, 510 a.a., D-ribose transporter ATP-binding protein from Pseudomonas simiae WCS417
Score = 261 bits (666), Expect = 6e-74
Identities = 168/499 (33%), Positives = 262/499 (52%), Gaps = 28/499 (5%)
Query: 5 VLRLAGITKRFGSLVANDAISLDLQAGEVLALLGENGAGKSTLMSILFGHYVADEGA-IE 63
+L + GI+K F L + L + GE+ AL+GENGAGKSTLM IL G Y AD G I
Sbjct: 6 LLEMQGISKTFNGLRVLKTVGLKVYPGEIHALMGENGAGKSTLMKILSGAYQADPGGEIR 65
Query: 64 VFGAPLPPGNPKAALAAGVGMVHQHFTLADNLSVLDNVMMGTEPLWRPVSRRAAARARLL 123
+ G +P +P A A G+ +++Q +L NLSV +N+ +G E R A +
Sbjct: 66 IAGQLIPTFDPATAKALGIAVIYQELSLCPNLSVAENIYLGRELRRGWTIDRKGMEAGCI 125
Query: 124 DVAQRFGLPVQPDAKIGSLSVGERQRVEILKALYRGARILILDEPTAVLTPQESEALFAT 183
+V QR G P ++ SLS+ ERQ VEI +AL+ A+IL++DEPT L+ +E++ LFA
Sbjct: 126 EVLQRLGAEFTPATRVSSLSIAERQLVEIARALHAHAKILVMDEPTTPLSSRETDRLFAL 185
Query: 184 LAQMVAQGLSVIFISHKLGEVLRVSHRVAVLRGGKLVAEARTADTTQAQLALWMVGHAVE 243
+ Q+ +QGL++I+ISH++ E+ +S RV+VLR G + E + L MVG +
Sbjct: 186 IKQLRSQGLAIIYISHRMAEIYALSDRVSVLRDGHYIGELTRDALSAEALVKMMVGRDLS 245
Query: 244 APKRRPAKSVGDAVCVLDHVSTAAGKDGGQDRLREVSLTLRAGEITAIAGVSGNGQVALA 303
++ + V+ A GK R+R S L AGE+ IAG+ G G+ LA
Sbjct: 246 GFYKKEHAAYNPGNVVMRVRDMADGK-----RVRHCSFDLHAGEVLGIAGLVGAGRTELA 300
Query: 304 ELLCGTRRASSGSAQLMGRALPP--SPARLVQRGVARIPEDRHAVGVVGDLPVWENAVSE 361
L+ +SG+ +++G+A+ P +PA ++ GV + EDR A G+ D+ V +N
Sbjct: 301 RLIFAADPRTSGTLEVVGKAVTPLRTPADAIRAGVVYLTEDRKAQGLFLDMSVADNI--N 358
Query: 362 RLRSPVFSRWSFIVKRAAARLHARRIEKAFDVRGAGLMAPARSLSGGNMQKLILGRALLS 421
+ ++ R A + K+ +R A A +LSGGN QK++L R L
Sbjct: 359 VCACVPDAHAGGVLDRDHALQRSNDAIKSLSIRVASGKVNAGALSGGNQQKVLLARLL-- 416
Query: 422 PEQPEAAKGDDNKKYPNRAPRLIVAHQPTWGLDIGAVAYVQQQLIAARDAGAAVLVISDD 481
P +++ +PT G+DIG+ + + + + AG ++VIS +
Sbjct: 417 ----------------EVKPHVLILDEPTRGVDIGSKSEIYRIINQLAQAGIGIVVISSE 460
Query: 482 LDEVLALGDRVAVMHGGHL 500
L E++ DRV +M G L
Sbjct: 461 LPEIIGTCDRVLIMREGQL 479
Score = 79.7 bits (195), Expect = 2e-19
Identities = 63/209 (30%), Positives = 100/209 (47%), Gaps = 14/209 (6%)
Query: 25 SLDLQAGEVLALLGENGAGKSTLMSILFGHYVADEGAIEVFGAPLPP-GNPKAALAAGVG 83
S DL AGEVL + G GAG++ L ++F G +EV G + P P A+ AGV
Sbjct: 277 SFDLHAGEVLGIAGLVGAGRTELARLIFAADPRTSGTLEVVGKAVTPLRTPADAIRAGVV 336
Query: 84 MVHQH---------FTLADNLSVLDNVMMGTEPLWRPVSRRAAARARLLDVAQRFGLPVQ 134
+ + ++ADN++V V + V R A R D + + V
Sbjct: 337 YLTEDRKAQGLFLDMSVADNINVCACV---PDAHAGGVLDRDHALQRSNDAIKSLSIRVA 393
Query: 135 PD-AKIGSLSVGERQRVEILKALYRGARILILDEPTAVLTPQESEALFATLAQMVAQGLS 193
G+LS G +Q+V + + L +LILDEPT + ++ + Q+ G+
Sbjct: 394 SGKVNAGALSGGNQQKVLLARLLEVKPHVLILDEPTRGVDIGSKSEIYRIINQLAQAGIG 453
Query: 194 VIFISHKLGEVLRVSHRVAVLRGGKLVAE 222
++ IS +L E++ RV ++R G+LVAE
Sbjct: 454 IVVISSELPEIIGTCDRVLIMREGQLVAE 482
Score = 48.1 bits (113), Expect = 8e-10
Identities = 65/249 (26%), Positives = 103/249 (41%), Gaps = 33/249 (13%)
Query: 276 LREVSLTLRAGEITAIAGVSGNGQVALAELLCGTRRAS-SGSAQLMGRALPP-SPARLVQ 333
L+ V L + GEI A+ G +G G+ L ++L G +A G ++ G+ +P PA
Sbjct: 22 LKTVGLKVYPGEIHALMGENGAGKSTLMKILSGAYQADPGGEIRIAGQLIPTFDPATAKA 81
Query: 334 RGVARIPEDRHAVGVVGDLPVWENAVSERLRSPVFSRWSFIVKRAAARLHARRIEKAFDV 393
G+A I ++ + + +L V EN R R + + R + A IE
Sbjct: 82 LGIAVIYQE---LSLCPNLSVAENIYLGREL-----RRGWTIDRKG--MEAGCIE-VLQR 130
Query: 394 RGAGLMAPAR--SLSGGNMQKLILGRALLSPEQPEAAKGDDNKKYPNRAPRLIVAHQPTW 451
GA R SLS Q + + RAL + +++V +PT
Sbjct: 131 LGAEFTPATRVSSLSIAERQLVEIARAL------------------HAHAKILVMDEPTT 172
Query: 452 GLDIGAVAYVQQQLIAARDAGAAVLVISDDLDEVLALGDRVAVMHGGHLGEARPATAWTR 511
L + + R G A++ IS + E+ AL DRV+V+ GH A +
Sbjct: 173 PLSSRETDRLFALIKQLRSQGLAIIYISHRMAEIYALSDRVSVLRDGHYIGELTRDALSA 232
Query: 512 EAIGLAMAG 520
EA+ M G
Sbjct: 233 EALVKMMVG 241