Pairwise Alignments

Query, 775 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Variovorax sp. SCN45

Subject, 854 a.a., Chaperone protein ClpB from Pseudomonas putida KT2440

 Score =  211 bits (536), Expect = 2e-58
 Identities = 127/304 (41%), Positives = 174/304 (57%), Gaps = 11/304 (3%)

Query: 450 VTEASAIAHFAKSTGLPESFLRDDQPLDDTQVHGFFAQKLFGQDAAIGHLKDVVYLFKAG 509
           VTE       +K TG+P + + + +     ++     Q++ GQ  A+  + + V   +AG
Sbjct: 531 VTEEEIAEVVSKWTGIPVAKMLEGEREKLLKMEELLHQRVIGQSEAVTAVANAVRRSRAG 590

Query: 510 LNDPAKPIATLLFAGPTGVGKTAAAKALARYFFGAGDDADPLFRIDMSEFQHAFQIARLI 569
           L+DP +P  + LF GPTGVGKT   KALA + F   D  + + RIDMSEF     +ARLI
Sbjct: 591 LSDPNRPSGSFLFLGPTGVGKTELCKALAEFLF---DTEEAMVRIDMSEFMEKHSVARLI 647

Query: 570 GSG------KRPGKLVEHVRRQPFSVVLLDEIEKADASVFDLLLTVLDEGRLRDSRGRMT 623
           G+       +  G L E VRR+P+SVVLLDE+EKA   VF++LL VL++GRL DS GR  
Sbjct: 648 GAPPGYVGYEEGGYLTEAVRRKPYSVVLLDEVEKAHPDVFNVLLQVLEDGRLTDSHGRTV 707

Query: 624 DFRSTVIVMTTNLGVRHGASLGFGEPANGGGAVHDIRQFFRPEFFNRIDRVVPFAPLSRT 683
           DFR+TVIVMT+NLG      L     A     +  +   FRPEF NRID VV F PL R 
Sbjct: 708 DFRNTVIVMTSNLGSAQIQELVGDREAQRAAVMDAVGAHFRPEFINRIDEVVVFEPLGRE 767

Query: 684 AIEAIAVQELQAIAQREGLARRGVRLNFSPEVVAFVADKGFSPKYGARPLQRAVEQHVVA 743
            I  I   E+Q    R  L  R + L+ SPE +  +   G+ P YGARPL+RA+++ +  
Sbjct: 768 QIAGIT--EIQLGRLRSRLLERELSLSLSPEALDKLIAVGYDPVYGARPLKRAIQRWIEN 825

Query: 744 AVAR 747
            +A+
Sbjct: 826 PLAQ 829



 Score = 35.8 bits (81), Expect = 1e-05
 Identities = 44/195 (22%), Positives = 73/195 (37%), Gaps = 11/195 (5%)

Query: 245 NLLLVGEPGVGKSVVILEAIRKAHRLTAARDAP-----PTFWRSHAERLVGRAKYLGEWQ 299
           N +L+GEPGVGK+ +   A   A R+    + P               L+  AKY GE++
Sbjct: 201 NPVLIGEPGVGKTAI---AEGLAQRIING-EVPDGLKGKRLLALDMGALIAGAKYRGEFE 256

Query: 300 ALCDQTVEWLDMSNG--LLWVTDFVNLLQVGGESPEESMAAYLLPALRRGTLRLVGEANP 357
                 +  L    G  +L++ +   ++  G           L PAL RG L  VG    
Sbjct: 257 ERLKSLLNELSKQEGQIILFIDELHTMVGAGKGEGAMDAGNMLKPALARGELHCVGATTL 316

Query: 358 SELEIARQRLPGFIDCFETLRLPEMDSVRARRVLDLFAGHAKNTLSIEIERPALDTGYRL 417
           +E     ++       F+ + + E        +L       +    + I   A+    +L
Sbjct: 317 NEYRQFIEKDAALERRFQKVLVEEPSEEDTIAILRGLKERYEVHHKVAITDGAIIAAAKL 376

Query: 418 LGRYVRYDSFPGKAV 432
             RY+     P KA+
Sbjct: 377 SHRYITDRQLPDKAI 391



 Score = 26.9 bits (58), Expect = 0.005
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 14/94 (14%)

Query: 524 GPTGVGKTAAAKALARYFFGAGDDADPLFRIDMSEFQHAFQIARLIGSGKRPGKLVEHVR 583
           G  GVGKTA A+ LA+     G+  D L      +   A  +  LI   K  G+  E ++
Sbjct: 206 GEPGVGKTAIAEGLAQRIIN-GEVPDGL----KGKRLLALDMGALIAGAKYRGEFEERLK 260

Query: 584 RQPFSVVLLDEIEKADASV---FDLLLTVLDEGR 614
                  LL+E+ K +  +    D L T++  G+
Sbjct: 261 S------LLNELSKQEGQIILFIDELHTMVGAGK 288