Pairwise Alignments

Query, 1089 a.a., hypothetical protein from Variovorax sp. SCN45

Subject, 854 a.a., Chaperone protein ClpB from Pseudomonas putida KT2440

 Score =  221 bits (562), Expect = 2e-61
 Identities = 125/266 (46%), Positives = 172/266 (64%), Gaps = 10/266 (3%)

Query: 497 RLIGQPEARAQLVDVIALIKSGLAAPGKPLSSLLFIGPTGVGKSEAAKLLADYLFEDEGG 556
           R+IGQ EA   + + +   ++GL+ P +P  S LF+GPTGVGK+E  K LA++LF+ E  
Sbjct: 569 RVIGQSEAVTAVANAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELCKALAEFLFDTEEA 628

Query: 557 LVRFDMNEYVDGDATGRLIGD-----AYRPDGQLTAAVRQRRACVLLLDEIEKAHPSVHD 611
           +VR DM+E+++  +  RLIG       Y   G LT AVR++   V+LLDE+EKAHP V +
Sbjct: 629 MVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPYSVVLLDEVEKAHPDVFN 688

Query: 612 LLLQVLGEGRLTDALGRTTDFSQCVVVLTSNLGAAAASRHTGFVRQEADVAHTYREAVER 671
           +LLQVL +GRLTD+ GRT DF   V+V+TSNLG+A      G   +EA  A    +AV  
Sbjct: 689 VLLQVLEDGRLTDSHGRTVDFRNTVIVMTSNLGSAQIQELVG--DREAQRA-AVMDAVGA 745

Query: 672 FFRPEFLNRIDQVVGFTPLGADDIAAIARLQLERVLARDGFVRRLTFLNVSAQALDHLAR 731
            FRPEF+NRID+VV F PLG + IA I  +QL R+ +R   + R   L++S +ALD L  
Sbjct: 746 HFRPEFINRIDEVVVFEPLGREQIAGITEIQLGRLRSR--LLERELSLSLSPEALDKLIA 803

Query: 732 LGHDETLGARALKRGIERALTQPIAQ 757
           +G+D   GAR LKR I+R +  P+AQ
Sbjct: 804 VGYDPVYGARPLKRAIQRWIENPLAQ 829



 Score = 81.6 bits (200), Expect = 2e-19
 Identities = 82/326 (25%), Positives = 148/326 (45%), Gaps = 19/326 (5%)

Query: 147 KERGDAFDPQRC--LAA--PNDELGELEISMHLAQGRFPFESEHDLR--AAMRDDGIGDG 200
           +++GD F       LAA   N +LG+L +S  +++      + ++LR  AA+ D    + 
Sbjct: 99  QQKGDQFISSELVLLAAMDENSKLGKLLLSQGVSKKALE-NAINNLRGGAAVNDANAEES 157

Query: 201 PTEMARAAVDLNDLYPD-ELTQAILRDEAIEELGRAIYRPDGGAGAIVLVGPRGAGKTAL 259
              + +  VDL     + +L   I RD+ I    + + R        VL+G  G GKTA+
Sbjct: 158 RQALDKYTVDLTKRAEEGKLDPVIGRDDEIRRTVQVLQRRTKNNP--VLIGEPGVGKTAI 215

Query: 260 VHGALRQFMVSETGRDRAKLQKIWHLDPMRVISGMSVIGQWQRRMAVLLQHLQFRLRDDF 319
             G L Q +++    D  K +++  LD   +I+G    G+++ R+  LL  L    + + 
Sbjct: 216 AEG-LAQRIINGEVPDGLKGKRLLALDMGALIAGAKYRGEFEERLKSLLNELS---KQEG 271

Query: 320 RIARPDHLYCDNLVALLAIGKSSQNTLTLADVLRPLLEKRAFTMIGEATPEAWQKVQQRD 379
           +I     L+ D L  ++  GK  +  +   ++L+P L +     +G  T   +++  ++D
Sbjct: 272 QII----LFIDELHTMVGAGK-GEGAMDAGNMLKPALARGELHCVGATTLNEYRQFIEKD 326

Query: 380 RRFADLFRVIRVDPPPREAAIRIVAWRRAELERQHECRISAAAVAELLKMERRFAADEVL 439
                 F+ + V+ P  E  I I+   +   E  H+  I+  A+    K+  R+  D  L
Sbjct: 327 AALERRFQKVLVEEPSEEDTIAILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQL 386

Query: 440 PGSAIRVLDRLAVRHARGEVGRAEVL 465
           P  AI ++D  A R       + EVL
Sbjct: 387 PDKAIDLIDEAASRIRMEIDSKPEVL 412



 Score = 27.3 bits (59), Expect = 0.005
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 8/55 (14%)

Query: 221 QAILRDEAIEELGRAIYR-------PDGGAGAIVLVGPRGAGKTALVHGALRQFM 268
           + I + EA+  +  A+ R       P+  +G+ + +GP G GKT L   AL +F+
Sbjct: 569 RVIGQSEAVTAVANAVRRSRAGLSDPNRPSGSFLFLGPTGVGKTELCK-ALAEFL 622