Pairwise Alignments

Query, 245 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) from Variovorax sp. SCN45

Subject, 244 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Rhodanobacter sp000427505 FW510-R12

 Score =  172 bits (437), Expect = 4e-48
 Identities = 104/241 (43%), Positives = 140/241 (58%), Gaps = 6/241 (2%)

Query: 3   RFHCSVPLTAGASLALPAGAARHV-QVLRMQPGDALTLFDGAGGEYAATVERMGRSDVAV 61
           R H   PL   A L LPA AA HV +VLRM PGD LT+F+G G +YAA +  MG+ +++V
Sbjct: 5   RIHLDQPLAVAAELNLPAQAAEHVARVLRMNPGDPLTVFNGDGHDYAAIILAMGKRELSV 64

Query: 62  TVGAHQPVEREASRAVHLAVGMPANERMDWLVEKATELGVSSIQPLATAHGVLRLSGERA 121
            + + Q V  E+   + LA G+   E+MD +V+KATELGV+ I PL T    ++L   RA
Sbjct: 65  RIESKQLVRNESPLPLTLAQGVARGEKMDLIVQKATELGVARIVPLLTERSEVKLDATRA 124

Query: 122 EKKRAHWEAIAVAACEQCGRNRVPVIHPVQTFSGWIAAQQQQGADTAERLVLSLADGTRG 181
           E++ AHW A+  +ACEQ GR R+P + P    + W+        D A RL L L +  R 
Sbjct: 125 ERRLAHWRAVVASACEQSGRARLPEVAPALPLAAWL---HDLADDGALRLAL-LPEAGRA 180

Query: 182 IATVQPDDGRGVLVLSGPEGGLSGTEEQEAIARGFAPITLGSRVLRAETAALAALVSLAE 241
              ++     G+LV+ GPEGGL   +     A GF  + LG RVLR ETA LAAL +L  
Sbjct: 181 SRELRFTAAGGLLVV-GPEGGLGERDVGALGAAGFEGLQLGPRVLRTETAGLAALAALQA 239

Query: 242 L 242
           L
Sbjct: 240 L 240