Pairwise Alignments

Query, 245 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) from Variovorax sp. SCN45

Subject, 239 a.a., 16S rRNA m3U1498 methyltransferase from Pseudomonas putida KT2440

 Score =  163 bits (413), Expect = 3e-45
 Identities = 92/237 (38%), Positives = 133/237 (56%), Gaps = 11/237 (4%)

Query: 1   MPRFHCSVPLTAGASLALPAGAARHV-QVLRMQPGDALTLFDGAGGEYAATVERMGRSDV 59
           + RF    PL+ G    LP   A ++ +VLRM PGDA+ LFDG+G EY   +  +G+  V
Sbjct: 3   LSRFFIDAPLSLGEH-DLPEAQAHYIGRVLRMAPGDAVQLFDGSGQEYRGQLLEVGKKTV 61

Query: 60  AVTVGAHQPVEREASRAVHLAVGMPANERMDWLVEKATELGVSSIQPLATAHGVLRLSGE 119
            V++      + ++   VHL  G+   ERMDW ++KATELG + I P+ +    +RL  E
Sbjct: 62  RVSLDQAFAGQADSPLHVHLGQGLSRGERMDWAIQKATELGANEITPIVSERCEVRLKDE 121

Query: 120 RAEKKRAHWEAIAVAACEQCGRNRVPVIHPVQTFSGWIAAQQQQGADTAERLVLSLADGT 179
           RA+K+ AHW  +A++ACEQCGR+ +PVIHP  T + W+++ +           L L    
Sbjct: 122 RADKRLAHWRQVAISACEQCGRSTLPVIHPPVTLAEWLSSTKAD---------LKLVLHP 172

Query: 180 RGIATVQPDDGRGVLVLSGPEGGLSGTEEQEAIARGFAPITLGSRVLRAETAALAAL 236
                +  +    +  + GPEGGLS  E ++A A GF    LG RVLR ETA + AL
Sbjct: 173 VAEPLISHEKPATLAFVIGPEGGLSEAEVEQAKAAGFHAARLGPRVLRTETAPVVAL 229