Pairwise Alignments

Query, 245 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) from Variovorax sp. SCN45

Subject, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Escherichia coli ECRC62

 Score =  154 bits (390), Expect = 1e-42
 Identities = 96/240 (40%), Positives = 126/240 (52%), Gaps = 8/240 (3%)

Query: 1   MPRFHCSVPLTAGASLALPAGAARHV-QVLRMQPGDALTLFDGAGGEYAATVERMGRSDV 59
           +PR +   PLT+ + +AL   AA H+ +VLRM PG AL LFDG+   + A +    +  V
Sbjct: 3   IPRIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSV 62

Query: 60  AVTVGAHQPVEREASRAVHLAVGMPANERMDWLVEKATELGVSSIQPLATAHGVLRLSGE 119
            V V   +  +RE+   +HL   M   E+M++ ++K+ ELGVS I PL +    ++L  E
Sbjct: 63  EVKVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSE 122

Query: 120 RAEKKRAHWEAIAVAACEQCGRNRVPVIHPVQTFSGWIAAQQQQGADTAERLVLSLADGT 179
           R  KK   W+ IA+AACEQCGRNRVP I P      W A Q        E L L+L    
Sbjct: 123 RLNKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCAEQD-------EGLKLNLHPRA 175

Query: 180 RGIATVQPDDGRGVLVLSGPEGGLSGTEEQEAIARGFAPITLGSRVLRAETAALAALVSL 239
                  P     V +L GPEGGLS  E        F  I LG RVLR ET AL A+ +L
Sbjct: 176 SNSINTLPLPVERVRLLIGPEGGLSADEIAMTARYQFTDILLGPRVLRTETTALTAITAL 235