Pairwise Alignments

Query, 245 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase (EC 2.1.1.193) from Variovorax sp. SCN45

Subject, 239 a.a., Ribosomal RNA small subunit methyltransferase E from Acinetobacter radioresistens SK82

 Score =  155 bits (393), Expect = 5e-43
 Identities = 93/237 (39%), Positives = 132/237 (55%), Gaps = 9/237 (3%)

Query: 1   MPRFHCSVPLTAGASLALPAGAARH-VQVLRMQPGDALTLFDGAGGEYAATVERMGRSDV 59
           MPRF+    LT G ++ L      H V+VLR Q GD+ TLF+G GGE+ A +  + +   
Sbjct: 1   MPRFYIEADLTVGTTVELTETVFHHWVKVLRAQIGDSATLFNGRGGEFEANLTEISKKTA 60

Query: 60  AVTVGAHQPVEREASRAVHLAVGMPANERMDWLVEKATELGVSSIQPLATAHGVLRLSGE 119
           +V + +  P +R       L   M   +RMD++++KATELGV++IQ L +    +RL  +
Sbjct: 61  SVAIRSSNPADRTPPFTTVLGQVMSKGDRMDYVIQKATELGVTTIQLLTSERCEMRLKYD 120

Query: 120 RAEKKRAHWEAIAVAACEQCGRNRVPVIHPVQTFSGWIAAQQQQGADTAERLVLSLADGT 179
           R +KK  HW+A+ +AACEQCG NR+P I P    + W+    QQ    A RLVL+     
Sbjct: 121 RDQKKLDHWQAVVIAACEQCGMNRIPEILPPVPLTDWL----QQNL-PATRLVLAPNKRQ 175

Query: 180 RGIATVQPDDGRGVLVLSGPEGGLSGTEEQEAIARGFAPITLGSRVLRAETAALAAL 236
           + + T   D    + +L GPEGGLS  E   A   GF    +G R+LR ETA + AL
Sbjct: 176 QNVLT---DAQTDLALLIGPEGGLSEAEIDMANHAGFKNWCIGERILRTETAPVVAL 229