Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 181 a.a., ECF RNA polymerase sigma factor SigF from Xanthobacter sp. DMC5

 Score =  105 bits (261), Expect = 6e-28
 Identities = 69/178 (38%), Positives = 100/178 (56%), Gaps = 7/178 (3%)

Query: 14  DAEAALRSLFLRGLDGDARAYRDFLQQLSAHLRAFLGKRL--FGWPD-EVEDLVQECLLA 70
           D E     L    L GD  AY   L+ L+  LR  + +RL   G P  E ED+VQE LLA
Sbjct: 3   DRELRWAQLMRSALAGDGAAYEQLLRDLAPALRTVVQRRLVRLGAPTAETEDVVQETLLA 62

Query: 71  MHNQRHTYQSDQPLTAWVHAIARYKMIDLLRAKSVREDLHDPLDDDLAVFAESAEEASD- 129
           +H +RHT++++ PL  W+  IAR KM+D LR +  R ++  P+ +D A F  + EE  D 
Sbjct: 63  VHLKRHTWRTEDPLGPWLWTIARNKMVDHLRRRGRRVEV--PV-EDFAEFLPAPEERPDT 119

Query: 130 ARRDLGGLLQTLPERQRLPIVHVKIEGLSVAEAASLTGMSESAVKVGIHRGLKALAAR 187
              ++   L  LP++Q+  +  V +EG SVAE A    M+  AV+V +HR   +L+AR
Sbjct: 120 GAMEVEQHLALLPQKQQAVLRSVAVEGASVAETAERMRMTPGAVRVALHRAFASLSAR 177