Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 192 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 55.5 bits (132), Expect = 6e-13
 Identities = 51/176 (28%), Positives = 81/176 (46%), Gaps = 6/176 (3%)

Query: 22  LFLRGLDGDARAYRDFLQQLSAHLRAFLGKRLFGWPDEVEDLVQECLLAMHNQRHTYQSD 81
           L +R  + D  A  + + +    L A L  R+ G  DE +D+ QE  L +  Q  +++S 
Sbjct: 10  LLVRIGNNDPAAVNEMVTRKLPRLLA-LASRILGDADEAKDVAQESFLRIWRQAASWRSG 68

Query: 82  QP-LTAWVHAIARYKMIDLLRAKSVR---EDLHDPLDDDLAVFAESAEEASDARRDLGGL 137
           +     W+H +A     D LR +  R   E+    L D  A   E  E A  + R +   
Sbjct: 69  EARFDTWLHRVALNLCHDRLRRRKQRPLSEEEVLELADSAAPLDEQLESADRSAR-MAAA 127

Query: 138 LQTLPERQRLPIVHVKIEGLSVAEAASLTGMSESAVKVGIHRGLKALAARFGNRWG 193
           L  LPERQR  IV    + LS  +AA+L  +S  A++  + R  + L ++  +  G
Sbjct: 128 LAALPERQREAIVLQYYQELSNIDAAALMNISVEALESLLSRARRQLRSQLADTSG 183