Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 190 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score = 49.7 bits (117), Expect = 3e-11
 Identities = 47/161 (29%), Positives = 70/161 (43%), Gaps = 9/161 (5%)

Query: 21  SLFLRGLDGDARAYRDFLQQLSAHLRAFLGKRLFGWPDEVEDLVQECLLAMHNQRHTYQS 80
           +L  R   GD+ A+     +    L  FL   L    +  E++ QE  L++       Q 
Sbjct: 12  ALLARYRTGDSAAFEALYARHRQGLYRFLVS-LSNKAELAEEIYQETWLSLIRSATQPQG 70

Query: 81  DQPLTAWVHAIARYKMIDLLRAKSVREDLHDPLDDDLAVFAESA---EEASDARRD---L 134
                 W+  IAR ++ID  R   +   LHD  D+ L   A+ +   E+     RD   L
Sbjct: 71  RASFRTWLFQIARNRLIDHWRKHGIHNPLHDSYDEQLHAQADDSAGPEQQLSLSRDQARL 130

Query: 135 GGLLQTLPERQRLPIVHVKIEG-LSVAEAASLTGMSESAVK 174
              LQ LPE QR  +  +++ G L V + A+LTG     VK
Sbjct: 131 DAALQGLPEDQR-EVFLLRLHGDLEVPQIAALTGTPLETVK 170