Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 220 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 57.0 bits (136), Expect = 2e-13
 Identities = 47/150 (31%), Positives = 68/150 (45%), Gaps = 8/150 (5%)

Query: 38  LQQLSAHLRAFLGKRLFGWPDEVEDLVQECLLAMHNQRHTYQSDQPLTAWVHAIAR-YKM 96
           L QL A  R+  G R     D  +DLVQE +L     R  Y +     AW   I R + +
Sbjct: 27  LPQLRAFARSLAGNR-----DTADDLVQETMLKAWRARERYVAGTNFRAWAFVILRNHFL 81

Query: 97  IDLLRAKSVREDLHDPLDDDLAVFAESAEEASDARRDLGGLLQTLPERQRLPIVHVKIEG 156
            ++ R + V E   D L  D  + A + +E S   RD+   L  LP  QR  ++ V   G
Sbjct: 82  SEMRRRRFVGE--WDELVADRVLAAPADQEKSVELRDMMRALMQLPVPQREALILVGAGG 139

Query: 157 LSVAEAASLTGMSESAVKVGIHRGLKALAA 186
           +S  E A + G++   +K  + R   AL A
Sbjct: 140 ISYEETAEIIGVAVGTIKSRVARARVALEA 169