Pairwise Alignments

Query, 196 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 220 a.a., RNA polymerase ECF-type sigma factor from Sphingobium sp. HT1-2

 Score = 58.2 bits (139), Expect = 1e-13
 Identities = 48/152 (31%), Positives = 69/152 (45%), Gaps = 5/152 (3%)

Query: 36  DFLQQLSA---HLRAFLGKRLFGWPDEVEDLVQECLLAMHNQRHTYQSDQPLTAWVHAIA 92
           +F  QL+A    LRAF  + L G  D  +DLVQE +L     R  Y +     AW   I 
Sbjct: 18  EFKAQLAAVLPQLRAF-ARSLAGNRDTADDLVQETMLKAWRARERYVAGTNFRAWAFVIL 76

Query: 93  RYKMIDLLRAKSVREDLHDPLDDDLAVFAESAEEASDARRDLGGLLQTLPERQRLPIVHV 152
           R   +  +R K    +  D L  D  + A + +E S   RD+   L  LP  QR  ++ V
Sbjct: 77  RNHFLSEMRRKRFVGE-WDELVADRVLAAPADQEKSVELRDMMRALMQLPVPQREALILV 135

Query: 153 KIEGLSVAEAASLTGMSESAVKVGIHRGLKAL 184
              G+S  E A + G++   +K  + R   AL
Sbjct: 136 GAGGISYEETAEIVGVAVGTIKSRVARARVAL 167